Bacteriology
Escherichia coli is responsible for 80% or more of 16 cases of acute nonobstructive pyelonephritis (
Table 23.1). Strains isolated from renal infection belong to a restricted number of O:K:H serotypes characterized by an array of virulence factors that include toxins, such as hemolysin; iron binding proteins, such as aerobactin; and specific adhesin proteins that bind to receptors on uroepithelial cells.
17,
18 These and other virulence genes are often clustered within the genome in pathogenicity islands.
17 Over 95% of strains of
E. coli isolated from patients with acute nonobstructive pyelonephritis contain genes for the pap G class II allele of the P fimbria adhesin.
17 The P fimbriae family is one of the mannose resistant adhesins, with a binding specificity for the gal (α1-4) gal-β disaccharide galabiose, which mediates adherence to uroepithelial cells. Specific clonal groups of
E. coli, some of which are multidrug resistant, have caused global
outbreaks of uncomplicated urinary infection, including pyelonephritis.
19 For instance, Prats and colleagues
20 described a uropathogenic clone (
E. coli 015:K52:H1) isolated during a 1-year period in Barcelona, Spain, which was overrepresented in patients with acute pyelonephritis.
Other gram-negative rods, including
Klebsiella spp.,
Proteus mirabilis, and
Enterobacter species, are isolated in a few patients with community-acquired renal infections but are much more common in patients with complicated infections.
P. mirabilis accounts for more than 40% of infections in infant boys.
21 P. mirabilis is particularly significant as a renal pathogen because of its propensity to promote struvite calculi.
18 Coagulase-negative staphylococci and
Enterococcus faecalis each cause 2% to 3% of invasive renal infections. The latter is a more important pathogen in elderly men. Group B streptococci are isolated in less than 1% of urinary infections, but appear to have a propensity for patients with diabetes and pregnant women.
22 Group A streptococci,
Streptococcus pneumoniae, and
Neisseria spp. are rare upper tract pathogens. Some patients with
Staphylococcus aureus bacteremia from other sites will have
S. aureus bacteriuria, with or without associated renal infection.
23 Although
Staphylococcus saprophyticus is an important cause of acute cystitis in women, its role in invasive upper tract infections is uncertain. Both
Mycoplasma hominis and
Ureaplasma urealyticum have infrequently been isolated as the sole pathogen in patients with classic acute pyelonephritis; increases in specific antibody titers to these agents support a role for infection.
24
Some relatively uncommon organisms isolated include
Leptospira spp.,
Brucella spp., and
Salmonella spp. A leptospiral infection usually involves the kidneys and has pathologic changes of interstitial inflammation, hemorrhage, and tubuloepithelial damage.
25 The pathogenesis of these lesions is attributed to leptospiral proteins together with hypotension, hypovolemia, and hyperbilirubinemia. Although renal insufficiency is common, localized renal symptoms are unusual; plasma creatinine and blood urea nitrogen (BUN) usually normalize in the second week of illness. A culture of urine on special leptospiral media is usually positive during the acute illness; a polymerase chain reaction or serology are also useful diagnostic tests, if available.
Brucella spp. infection may, rarely, be associated with bacterial pyelonephritis and may also present as glomerulonephritis or interstitial nephritis.
26 Salmonella spp. are also a rare cause of pyelonephritis, although renal dysfunction is reported to occur in up to 36% of infected adults, usually due to dehydration and rhabdomyolysis.
27,
28
The microbiology of pyelonephritis in patients with a complicated urinary infection, including catheter-associated hospital-acquired urinary infection, is substantially different.
E. coli, usually arising from the patient’s own gastrointestinal tract, remains the most common urinary pathogen, but many other species are frequently isolated, and bacteria are likely to be of increased resistance. The spectrum of infecting organisms in a patient will be influenced by exposures to the health care environment as well as current or recent antimicrobial exposure.
E. coli isolated from pyelonephritis in patients with complicated urinary infection have a much lower prevalence of potential virulence factors, including the P fimbria, consistent with host rather than organism factors being the principal determinants of infection.
29,
30,
31 More resistant gram-negative rods, including
Pseudomonas aeruginosa and
Serratia marcescens, account for 10% to 15% of hospital-acquired invasive upper tract infections in some reports, and may occur in outbreaks.
32 Corynebacterium group D2 has been identified as a unique etiologic agent of nosocomial urinary infection, particularly in catheterized patients.
33 These organisms are urease producers and may be isolated from persistent infections including bladder and renal calculi, pyelonephritis, and bacteremia. They are slow growing and sometimes missed if routine cultures are discarded after 24 hours.
Organisms that are unable to use urine as a nutrient source only rarely cause pyelonephritis. These include most species of obligate anaerobes, for which the relatively high oxygen tension in normal urine also likely inhibits growth. In a prospective study of 5,781 urine specimens, Segura et al.
34 identified only 10 patients with positive urine Gram stains and negative aerobic cultures from which anaerobic bacteria were isolated— an overall prevalence of 1.2% of bacteriuric specimens. All but 1 of these 10 patients had complicated urologic problems. Uropathogens surviving in the kidney without cell walls, also called L forms or protoplasts, have been suggested to contribute to relapsing pyelonephritis by enabling organisms to persist and cause chronic disease in the hypertonic environment of the renal medulla.
35 However, studies have not yet confirmed a role for these bacterial forms in urinary infections.
Host Factors and Host Response
Host factors contributing to pyelonephritis and the host immune and inflammatory response are described in detail in
Chapter 21. Behavioral factors associated with acute nonobstructive pyelonephritis in premenopausal women are similar to those for acute uncomplicated cystitis—most importantly sexual intercourse and spermicide use for birth control.
12 There is also a genetic predisposition, as evidenced by a twofold to sixfold increased prevalence of urinary infections in the mothers and female siblings of girls and women with recurrent urinary infections.
36 Women who are nonsecretors of the blood group substance have an increased risk of recurrent acute uncomplicated urinary infections,
37 and selected blood group antigens are associated with an increased frequency of urinary infections in girls without vesicoureteral reflux.
21 Epithelial cell receptors necessary for
E. coli binding are glycolipids of the globoseries, the antigens of the P blood group system. Recent studies exploring polymorphisms of effector molecules of the innate immune response have described other potential genetic determinants. In children without vesicoureteral reflux, pyelonephritis is reported to be associated with polymorphisms and mutations of the CXCR1 receptors for interleukin (IL)-8 and GCP-2 in some,
38,
39 but not all studies.
40 A single nucleotide polymorphism for IL-8 was associated with severity of pyelonephritis among
children.
40 Genetic variation in the Toll-like receptor (TLR) promoter TLR-4 may also influence susceptibility to pyelonephritis in children,
41 whereas a TLR-1 receptor polymorphism has been reported to be associated with protection from pyelonephritis in women.
42
Individuals with structural or functional abnormalities of the urinary tract have a greatly increased risk of pyelonephritis, apparently independent of behavioral or genetic factors (
Table 23.2). Obstruction at the level of the kidney or ureter may directly inhibit urine flow from the upper tract, allowing bacteria to establish infection behind the obstruction. In addition, voiding abnormalities, such as neurogenic bladders, are frequently associated with reflux, which promotes upper tract infections.
Acute pyelonephritis is characterized by an intense local and systemic inflammatory and immune response.
17 Following the stimulation of epithelial receptors within the urinary tract by bacteria or bacterial products, there is activation of the innate immune response through TLRs. The Pap G adhesin appears to be important in stimulating the epithelial cytokine response.
43 Pyuria occurs early, and urinary and serum cytokines and chemokines including IL-6, IL-8, and others are elevated.
42,
43,
44,
45 Alterations in the expression of antimicrobial peptides may be another element of the innate response, but there is a limited evaluation to date of the role of these molecules within the urinary tract.
46 The intensity of the inflammatory response correlates with the severity of symptoms. Pyelonephritis is associated with a greater inflammatory response than a lower tract infection, and urinary cytokines have increased levels in symptomatic compared with asymptomatic UTIs. This inflammatory response resolves promptly with the institution of effective antimicrobial therapy.
47 Renal infection is also associated with both a local and a systemic humoral immune response. An immunoglobulin (Ig)M antibody predominates with the initial infection but subsequent infections are dominated by an IgG response.
17,
18 The primary antibody response develops about 7 to 10 days following the initial infection. Local urine antibody includes both an IgA and an IgG response to the infecting bacteria. Whether this humoral immune response has any protective role for subsequent infection remains controversial.