The Immunobiology of Transplantation

Key Points

  • Allograft rejection occurs because the recipient’s immune system recognizes the donor’s human leukocyte antigens (HLAs) as nonself through three pathways. In the direct pathway, recipient CD8 T cells recognize intact donor HLA class I molecules on donor antigen-presenting cells (APCs). In the indirect pathway, donor HLA peptides are processed by the recipient’s APCs and expressed on HLA class II molecules, where they are recognized by recipient CD4 T lymphocytes. In the semidirect pathway, donor HLA molecules are transferred on recipient APCs, which can then interact with recipient CD8 T lymphocytes.

  • After alloantigen recognition by the T-cell receptor, cosignals must take place for T cell activation to occur. Although many other cosignals exist, the interaction between B7 at the surface of APC and CD28 on the T cell surface is one of the important stimulatory cosignals, while the interaction between B7 and CTLA4 is an important coinhibitory pathway.

  • Following their activation and depending on signals provided by the inflammatory milieu, CD4 T cells can differentiate into at least five major subsets: Th1, Th2, Th17, follicular helper T (Tfh) cells, and regulatory T (T-reg) cells. Three subtypes are involved in immunogenic responses and rejection: Th1, Th17, and Tfh. Two subtypes display tolerogenic roles: Th2 and T-reg.

  • B lymphocytes become activated when their B cell receptor engages an antigen (soluble or presented by an APC) that they internalize, process, and reexpress on HLA class II molecules. Through interactions with cognate CD4 Tfh cells, B lymphocytes differentiate into antibody-producing plasmocytes or memory B cells.

  • Important effector mechanisms of allograft rejection include T-lymphocyte (CD8) cytotoxicity through the perforin-granzyme and the Fas/Fas-ligand pathways and donor-specific, anti-HLA antibody-mediated damage, which is secondary to complement activation through the classical pathway or antibody-dependent cytotoxicity.

Overview

Allograft rejection occurs because antigenic determinants present within the allograft are recognized by the recipient’s immune system as nonself, dangerous, or both. In this chapter, we first review the mechanisms involved in allorecognition. Next, we discuss transplant-relevant antigens and antibodies. Lastly, we provide an overview of the pathophysiology of acute and chronic kidney graft rejection and of the mechanism of action of immunosuppressive drugs. The clinical aspects of acute kidney graft rejection are covered in greater depth in Chapter 67 .

Mechanisms Involved in Allorecognition

T cells recognize foreign human leukocyte antigens (HLAs) through their T-cell receptors (TCRs) after these antigens are presented by antigen-presenting cells (APCs). The TCR is expressed at the cell surface in conjunction with CD3, which is present in all mature T cells. Both cytotoxic (CD8) and helper (CD4) T cells are activated by the CD3-TCR complex. Different cells within the immune system, such as dendritic cells (DCs), monocytes, macrophages, and B cells, play important roles in presenting antigens to T cells. Upon TCR ligation, phosphorylation of the CD3 complex favors calcium release from the endoplasmic reticulum and calcium binding to calmodulin, leading to activation of the phosphatase activity of calcineurin. Calcineurin dephosphorylates nuclear factor of activated T cells (NFAT), allowing for its nuclear translocation and transcription of a series of effector genes including interleukin-2 (IL-2) and the IL-2 receptor (IL-2R). Two major T cell subsets, CD4 and CD8 T cells, are central players in allograft rejection.

Antigen presentation is an integral component of the normal immune response that helps protect against infectious agents and maladapted cells, such as cancer cells. However, in transplantation, the immune system is activated, in large part, by alloimmune triggers (i.e., antigens that are genetically encoded to differ between two individuals of the same species, such as the HLA molecules, which are encoded by the major histocompatibility complex [MHC]).

Antigen Presentation Pathways

Direct Pathway

In the transplantation setting, intact MHC I molecules expressed on donor cells can be recognized by alloreactive recipient T cells. This mode of recognition is referred to as direct allorecognition. Direct allorecognition , is thought to depend on the presence of donor APCs such as DCs that traffic from the allograft to secondary lymph nodes, where they interact with recipient CD8 cytotoxic T cells. The direct response is rapid and relatively short-lived owing to eventual destruction of donor DCs.

MHC I molecules are expressed on all nucleated cells. In the normal nontransplanted host, MHC I molecules at the surface of APCs also interact with CD8 T cells. However, in the normal host, peptide antigens bound to MHC I molecules are being recognized rather than the MHC molecules themselves. Antigenic peptides presented by MHC I (HLA-A, B, C) usually originate from endogenous proteins that have been degraded to eight or nine amino acid peptides by the proteasome complex. Proteasomes are composed of a barrel-shaped catalytic 20S complex capped at both ends by 19s regulatory complexes that control access to the catalytic core. Proteins that are damaged or dysfunctional are targeted for degradation by the addition of ubiquitin tags in a process called ubiquitination. Polyubiquitinated proteins are recognized by the 19S complex, allowing them to move toward the proteolytic core for degradation. Peptides are degraded down to eight or nine residues and loaded onto MHC I molecules in the endoplasmic reticulum by the transporter associated with antigen processing (TAP). In the nontransplant setting, presentation of antigenic peptides by MHC I molecules plays an important role in the immunogenicity of proteins that stem from a viral infection or mutant sequences originating from cancer cells. In the setting of transplantation, however, donor peptides present within the MHC I groove of donor APCs can impact, either positively or negatively, the capacity to present allogeneic determinants to the recipient’s immune system. They can alter the stability of the immunologic synapse (the site of physical interaction between APC and T cell) and therefore modulate the robustness of the response.

Indirect Pathway

The indirect presentation pathway proceeds when allopeptides (fragments of donor HLA molecules) are loaded onto the MHC II molecules expressed on the recipient’s APCs. Non-MHC peptides can also be presented in this manner since, in the nontransplanted host, this pathway deals with the presentation of endocytosed antigens digested by the lysosomal pathway, which are reexpressed on the cell surface as peptides (≥15 amino acids) bound to MHC II molecules. MHC II–bound peptides are recognized by the TCR of CD4 T cells, leading to their activation when proper costimulatory signals are also provided. MHC II molecules are expressed on a restricted number of immune cells, such as DCs, monocytes, macrophages, and B cells. However, interferon-γ can induce the expression of MHC II on several cell types including renal epithelial and endothelial cells, which can then acquire nonprofessional antigen-presenting capacity.

MHC II molecules are formed in the endoplasmic reticulum, where they associate with the invariant chain (li) that fills the peptide-binding groove. The invariant chain targets MHC II for the endosomal pathway, where various degradation steps allow for the loading of MHC II with antigenic peptides. Once loaded and stabilized, the MHC II molecule moves to the plasma membrane. In the transplant setting, peptides derived from polymorphic regions of the donor MHC molecules can be taken up by recipient APCs, degraded within the endocytic compartment, and loaded onto recipient MHC II molecules for presentation to alloreactive recipient CD4 T cells. MHC II molecules expressed by DCs play an important role in initiating the indirect antigen presentation pathway through interactions with CD4 T cells. The indirect pathway is thought to be activated in the long term after transplantation and may play an important role in promoting alloantibody production and antibody-mediated allograft rejection.

Semidirect Pathway and Cross-Dressing

The semidirect pathway refers to the transfer of intact donor MHC molecules to the recipient’s APCs. The semidirect pathway is posited to play an important role in T cell allosensitization after donor APCs have been eliminated by the host response or when these cells are unable to migrate to secondary lymph nodes because of severed lymphatic vessels at the time of transplantation. In the semidirect pathway, intact donor HLA molecules can be picked up by recipient APCs and reexpressed on their surface, a mechanism termed “cross-dressing.” Directly alloreactive recipient T cells can then interact with cross-dressed APCs, leading to their activation.

The semidirect pathway helps explain the activation of naïve T cells in situations where donor DCs are not available for alloantigen presentation. In several transplantation models, donor DCs have been detected only at very low numbers in draining lymphoid organs, and they have been shown to be rapidly eliminated by natural killer (NK) cells. Recipient DCs rapidly invade and replace donor DCs within a few days after transplantation. It is thought that the semidirect pathway is used by recipient DCs, in conjunction with the indirect pathway, to present alloantigens to naïve recipient T cells, explaining the long-term capacity to mount a rejection response even after donor DCs have been destroyed. Although different types of DCs have been implicated in alloantigen presentation, monocyte-derived DCs are thought to play a central role in the sensing of self and nonself antigens, as well as in the presentation of donor alloantigens through the semidirect pathway. , The mechanisms responsible for cross-dressing of donor MHC molecules on DCs are the subject of current intense investigation. It was previously thought that MHC molecules shed from the allograft could be taken up by DCs and reexpressed on the cell surface. More recently, a potential role for extracellular vesicles in the transfer of intact donor MHC molecules was suggested. All cell types can release a wide array of extracellular vesicles that can serve as intercellular cargo for protein, mRNA, and microRNA. Exosomes—extracellular vesicles of endocytic origin—can carry MHC molecules and are thought to initiate cross-dressing of MHC molecules when engulfed by DCs. ,

The antigen presentation capacity of DCs (whether allogenic or not) varies with their state of maturation and activation. Release of danger-associated molecular patterns (DAMPs) by the graft, in association with ischemia-reperfusion at the time of transplantation, for example, favors maturation of DCs. Regardless of donor or recipient origin, DCs migrate to secondary lymphoid tissue to interact with naïve T cells. However, under certain inflammatory conditions, such as chronically rejecting allografts, structures reminiscent of lymphoid organs can form within allografts. These structures, called tertiary lymphoid organs, allow antigen presentation within the allograft and potentially the production of alloantibodies and autoantibodies , of importance in rejection.

T Cell Cosignaling Pathways

The TCR is an octameric complex of variable TCR receptor α and β chains with three dimeric signaling modules, CD3δ/ε, CD3 γ/ε, and CD247ζ/ζ or ζ/η. TCR ligation activates Signal 1. However, a second signaling pathway, Signal 2, needs to be triggered for T cell activation and acquisition of effector function. Pathways that activate or inhibit Signal 2 are known as cosignaling pathways ( Fig. 68.1 ). These pathways have profound implications on T-cell responses to antigenic determinants, controlling activation, proliferation, differentiation, cytokine production, and effector functions.

Fig. 68.1

Cosignaling interactions in T cells.

(A) CD28 is constitutively expressed on the cell surface of naive CD4 + and CD8 + T cells and provides an essential costimulatory signal for T cell growth and survival upon ligation by B7-1 and B7-2 on antigen-presenting cells (APCs). Cytotoxic T lymphocyte antigen 4 (CTLA4) is induced, following T cell activation, and it suppresses T cell responses. When CTLA4 is upregulated, CD28 expression is subsequently downregulated by endocytosis. Expression of B7-1 and B7-2 is modulated by the activation state of the APC. B7-2 is constitutively expressed on APCs at low levels, and infection, stress, and cellular damage recognition by innate receptors activate APCs and induce transcription, translation, and transportation of both B7-1 and B7-2 to the cell surface. (B) Left panel, Costimulatory molecules deliver positive signals to T cells following their engagement by ligands and counter-receptors on APCs. Several costimulatory molecule interactions are bidirectional. Right panel, Coinhibitory molecules deliver negative signals into T cells. CTLA4 is involved in bidirectional interactions: It inhibits T cell function after binding B7-1 and B7-2, and CTLA4-bound B7-1 and B7-2 may induce the expression of indoleamine 2,3-dioxygenase (IDO), which acts in trans to suppress activation of conventional T cells and promote the function of regulatory T cells.

With permission from Chen L, Flies DB. Molecular mechanisms of T cell costimulation and co-inhibition. Nat Rev Immunol . 2013;13(4):227−242.

The first and best characterized costimulatory pathway depends on interactions between the CD28 receptor, expressed on naïve T cells, and B7 ligands, expressed on APCs. CD28 is constitutively expressed by naïve CD4 and CD8 T cells, and, upon ligation with B7.1 (CD80) or B7.2 (CD86), it activates cosignaling pathways that drive activation and survival of T cells. The expression of B7.1 and B7.2 by APCs is influenced by their activation state, which can be triggered by exposure to proinflammatory cytokines, such as interleukin-1β (IL-1β), interleukin-6 (IL-6), and tumor necrosis factor–α (TNF-α). Cytotoxic T-lymphocyte antigen-4 (CTLA4) was the first coinhibitory pathway to be described. CTLA4 overexpression and concomitant downregulation of CD28 by endocytosis help prevent unregulated T cell activation. Since the initial description of cosignaling pathways in the late 1980s, more than 25 different types of cosignaling pathways have been characterized. , Most belong to the immunoglobulin superfamily (IgSF) and the tumor necrosis factor receptor superfamily (TNFRSF). Other costimulatory pathways that have emerged as important regulators of T cell activation in transplantation include the CD40/CD154 (CD40 ligand) and CD278/CD275 pathways. CD40, a member of the TNFRSF expressed on most APCs, interacts with the CD40 ligand expressed on T cells, favoring their activation. This pathway impacts both T cell activation and T and B cell interactions. Inducible T cell costimulator (ICOS or CD278), a member of the IgSF, is expressed on activated T cells and favors further proliferation, cytokine production, and effector functions upon interaction with CD275. , In addition, some findings suggest that signals delivered through innate immune sensors, such as Toll-like receptors (TLRs), NOD-like receptors (NLRs), and stimulator of interferon genes (STING), can serve as cosignaling pathways and/or impact T cell costimulation, activation, and effector functions of T cells.

T Cell Phenotypes

After their activation and depending on signals provided by the inflammatory milieu, CD4 T cells can differentiate into at least five major subsets: Th1, Th2, Th17, follicular helper T (Tfh) cells, and regulatory T (T-reg) cells. Three subtypes are involved in immunogenic responses and rejection: Th1, Th17, and Tfh. Two subtypes display tolerogenic roles: Th2 and T-reg.

Th1 cells have long been considered the cornerstone of allograft rejection. Activated Th1 CD4 T cells produce IL-2 and express IL-2R, with their interaction prompting proliferation. The transcription factor T-bet, also present in Th1 cells, favors the expression of interferon-γ and TNF-α. Cytokines released by Th1 CD4 T cells promote the activation of CD8 cytotoxic T cells, which in turn recognize allograft cells through the direct pathway and use the perforin-granzyme cytolytic pathway to destroy them. Interferon-γ produced by Th1 cells also induces the production of complement-activating antibodies by B cells, therefore recruiting an additional mechanism of allograft rejection.

Th17 cells are induced under the combined actions of transforming growth factor–β (TGF-β), IL-6, and IL-1β. They produce interleukin-17 (Il-17), interleukin-21 (IL-21), and interleukin-22 (IL-22) following the activation of the transcription factors STAT3 and RORγt. Th17 cells have been implicated in many autoimmune diseases in addition to transplant rejection.

Tfh cells secrete interleukin-4 (IL-4) and IL-21 and express CD40 ligand. The interaction between CD40 ligand and CD40, expressed on B cells, promotes the maturation of naïve B cells into memory B cells and antibody-secreting plasmocytes.

Th2 cells are considered antiinflammatory and are characterized by the production of IL-4, interleukin-5 (IL-5), and interleukin-13 (IL-13). IL-4 produced by Th2 cells induces the differentiation of CD8 T cells into a noncytotoxic phenotype and the production of non–complement-fixing antibodies by B cells. Th2 cytokines can also prompt the emergence of T-reg cells.

T-reg cells express CD4, CD25, and the transcription factor forkhead box P3 (FOXP3). They are considered the primary mediators of peripheral tolerance. Like effector T cells, T-reg cells express a TCR that activates calcineurin-dependent pathways on ligation with antigenic peptides presented by MHC II molecules. Their activation depends on two signals ( Fig. 68.2 ). However, unlike effector T cells, the second signal does not depend on interactions between CD28 and B7.1 or B7.2, since CTLA4 expressed on T-reg cells inhibits CD28 signaling. Rather, the second signal is initiated by IL-2/IL-2R interactions and thus tends to occur in the presence of high levels of IL-2. T-reg cells have been shown to suppress the function of CD4 T cells, CD8 T cells, B cells, and macrophages. Their suppressive activity can inhibit a number of immunogenic reactions including allograft rejection. This immunosuppressive function depends on at least five mechanisms of action :

  • Secretion of inhibitory cytokines such as interleukin-10 (IL-10), TGF-β, and interleukin-35 (IL-35)

  • Consumption of IL-2

  • Suppression by metabolic disruption: T-reg cells express the ectoenzymes CD39 and CD73, therefore favoring extracellular ATP and ADP metabolism to adenosine The latter interacts with the A2A adenosine receptor on effector T cells, thereby launching signaling pathways that inhibit effector T cell activation

  • Suppression by cytotoxicity: T-reg cells employ the granzyme-perforin lytic system to kill activated NK cells and cytotoxic CD8 T cells

  • Modulation of the activation and maturation of APCs, such as DCs

Fig. 68.2

Activation of effector and regulatory T cells by antigen-presenting cells.

Key surface molecules in activation of (A) T effector cells and (B) T regulatory cells (T-regs). The key molecules required for both cells are similar. The T-cell receptor complex includes CD3, CD2, CD4 or CD8, LFA1, and CD45R, and activation of T-cell receptor (TCR) by antigen results in Signal 1 for T effector cells and T-regs. In effector T cell–lineage T cells, CD28 on the T cells is activated by B7.1 and B7.2 on antigen-presenting cells (APCs) and generates Signal 2, which, combined with Signal 1, initiates effector T cell activation. The activation of effector T cells is augmented by CD40L binding to CD40 and cytokines, such as IL-2 and IL-12, for generation of Th1 cells. With T-regs, CTLA4 binds to B7.1 and B7.2 and limits activation through CD28. Thus the effector T cells Signal 2 pathway is not required for T-reg activation. The second signal for T-reg activation is generated by IL-2 binding to the IL-2 receptor, which includes CD25.

With permission from Hall BM. T cells: soldiers and spies—the surveillance and control of effector T cells by regulatory T cells. Clin J Am Soc Nephrol . 2015;10(11):2050−2064.

The importance of more recently described T cell phenotypes in human transplantation and rejection, such as Th9 and Th22, remains debated. ,

Following their activation, CD4 T cells initiate a proliferative response regulated by the mammalian target of rapamycin (mTOR) pathway, thus leading to clonal expansion. Depending on their phenotype, CD4 T cells can favor either activation or inhibition of other components of the adaptive immune response including CD8 T cells and B cells. Activation of cytotoxic CD8 T cells can, in turn, directly damage and kill allograft cells through the release of perforin and granzyme B, whereas maturation of B cells into antibody-secreting plasmocytes can lead to the production of antibodies that are detrimental to allograft.

B Cells and Antibody Production

The humoral response, mediated by antibody-producing B cells and leading to antibody-dependent damage to the allograft, is the other major component of the adaptive immune system that is of pivotal importance in allograft rejection. Hyperacute antibody-mediated rejection was described in the 1960s as an extremely severe and rapid form of rejection dependent on the presence of preformed anti-HLA antibodies that target the allograft endothelium as soon as reperfusion is established. The use of crossmatching to screen for the presence of preformed anti-HLA antibodies has resulted in a sharp decrease in the occurrence of hyperacute antibody-mediated rejection. Hence the importance of antibodies and B cells as mediators of rejection was forgotten or dismissed until the turn of the 21st century, when standardization of C4d staining for kidney allograft biopsies reactivated the field of antibody-dependent rejection. HLA typing and anti-HLA antibodies are discussed later in this chapter.

B cells exert a number of important immunologic functions; the most studied is the production of antibodies that can bind protein, peptide, and carbohydrate antigens (as opposed to T cells that react exclusively to antigenic peptides). B cells are good APCs and play an important role in the architecture of secondary lymphoid organs. They are characterized by the surface expression of a B cell receptor (BCR), composed of a membrane-bound immunoglobulin (Ig) molecule associated with an Ig αβ heterodimer (CD79a and CD79b) that controls downstream signaling. B cells also express different surface markers depending on their state of maturation and differentiation. The B cell lineage contains three major subsets: B1, B2, and regulatory B cells ( Fig. 68.3 ). B1 cells are found in the peritoneal and pleural cavity. They express CD19 and CD5, produce low-affinity polyreactive natural antibodies, and do not require T cell help. B2 cells are formed in the bone marrow and circulate to the spleen and lymph nodes as immature B cells. They differentiate into either plasmablasts, memory B cells, or long-lived plasma cells following antigenic interaction and maturation within lymph nodes. Regulatory B cells with immune inhibitory functions are characterized by IL-10 secretion and the surface expression of CD24, CD38, CD5, and CD1d. Regulatory B cells represent approximately 5% of circulating B cells.

Fig. 68.3

B cell ontogeny and differentiation .

Most peripheral B cells are produced in the bone marrow and referred to as B2 cells. A minor B cell population, known as B1 cells, are found in not only the pleural and peritoneal cavities but also small numbers in the spleen. B1 cells express CD19 and high levels of CD5, and they produce low-affinity natural antibody (mainly IgM), without T cell help. It is currently unclear whether B1 cells arise from a unique progenitor or from a progenitor common to both B1 and B2 cells. B2 cells are formed in the bone marrow and develop from pro-B cells, to pre-B cells, to immature B cells, which are released into the periphery. Following antigen encounter, B cells obtain T cell help and enter the germinal center. Here they undergo class switch recombination and affinity maturation, a process involving iterative cycles of somatic hypermutation and proliferation. A specific subset of T cells, known as T follicular helper cells (Tfh), are critical for germinal center formation and thought to provide both contact and cytokine (IL-21) signals for germinal center B cells. Short-lived plasmablasts and memory cells arise from GC B cells. Some plasmablasts circulate (depending on the expression of CXCR3 and CXCR4), and a small proportion find a suitable niche for long-term survival within bone marrow and inflamed tissue (e.g., rejecting allografts). A variety of molecules are expressed by B2 cells during their maturation and activation, as shown; Fcγ RIIB is expressed throughout development, whereas most other markers are expressed on either B cells or antibody-producing plasma cells. Dark-blue bars represent high expression, and light-blue bars represent intermediate expression. Regulatory B cells are a recently described subset, which inhibits T cell responses via the production of IL10. These cells are likely to arise from multiple B cell subsets (B1, transitional and marginal zone). Regulatory B cells have recently been described in humans and are characterized by surface expression of CD5, CD1d, CD24, CD27, and CD38. There are also thought to be regulatory B cells, which act independently of IL-10 (not shown).

With permission from Clatworthy MR. Targeting B cells and antibody in transplantation. Am J Transplant . 2011;11(7):1359−1367.

B cells become activated when their BCR engages an antigen, either soluble or presented by an APC. This leads to phosphorylation of tyrosine residues within the cytoplasmic domains of CD79a and CD79b, as well as activation of downstream signaling pathways. Several receptors present on B cells, such as CD19 and Toll-like receptors, or the presence of complement components, such as C3b and C3d, can lower the threshold of signaling initiation. The presence of cytokines, such as B cell activating factor (BAFF), can also enhance B cell activation and survival. Full B cell activation and maturation occurs in the lymph nodes, which are composed of an outer portion or cortex of B cell lymphoid follicles and an inner portion rich in immature and mature T cells. Upon antigen recognition by the BCR, B cells internalize and process bound antigen and reexpress antigenic peptides on MHC II molecules. These B cells then move to the border between the follicle and T cell zone, where they present antigen to a cognate (i.e., matching) Tfh CD4 T cell. This first phase of activation can result in the differentiation of B cells into short-lived plasmablasts that produce low-affinity IgM antibodies, or the formation of a germinal center that will allow B cell differentiation into either memory B cells or long-lived plasma cells that are responsible for the production of high-affinity antibodies. Germinal centers are formed when B cells proliferate after BCR engagement, forcing naïve B cells to leave the follicle. B cells then present MHC II–bound antigens, in association with CD40 and CD80 or CD86, to Tfh cells for a second time. This leads to interactions with the TCR, CD40 ligand, and CD28 on Tfh. In addition, Tfh produces IL-21, which favors B cell clonal expansion and antibody class switch recombination.

Antibodies are heterodimeric protein structures composed of a light chain and a heavy chain. The five human Ig isotypes (IgM, IgG, IgA, IgE, and IgD) differ in the structure of the heavy chain constant region. The antigen-binding site is composed of the variable regions of the heavy and light chains. Both chains contain a constant region and a variable region that undergo recombination and somatic hypermutation. The variable (V), diversity (D), and joining (J) gene segments of the Ig heavy and light chain loci rearrange through germline DNA recombination to produce a diversified B cell repertoire rich in somatic DNA recombination events. However, BCRs with higher affinity confer enhanced capacity to interact with Tfh cells, therefore favoring the selection and expansion of the most effective B cell clones. While long-lived plasma cells home to the bone marrow to continuously produce high-affinity antibodies, memory B cells require antigen rechallenge to initiate antibody production.

Mounting evidence suggests that B cell activation, maturation and antibody production can also occur within tertiary lymphoid structures developing within allografts. These structures are found in association with chronic inflammatory conditions including autoimmune disorders, infection, cancer, and transplantation. Tertiary lymphoid structures are reminiscent of germinal centers, with compartmentalization of T and B cells and the presence of DCs. They have been reported in animal models of rejection and in chronically rejected human renal and cardiac allografts. The production of lymphotoxin-β by B cells can favor the formation of tertiary lymphoid structures.

The current classification of rejection establishes a distinction between T cell–mediated and antibody-mediated rejection episodes. However useful for histopathologic classification, it is important to remember that in most cases, the activation of naïve B cells leading to the production of donor-specific antibody (DSA) requires T cell help. However, if the production of long-lived plasmablasts or memory B cells is established before transplantation because of allosensitizing events, such as pregnancy or prior transplantation, the need for T cell help is bypassed. Autoantibodies have also been associated with either increased risk of acute rejection or reduced long-term allograft survival, as discussed in detail later in this chapter. The role of T cell help in the production of these autoantibodies remains unclear.

Antihuman Leukocyte Antigen Antibodies and Graft Injury

DSA can injure the allograft through various pathways including complement activation and antibody-dependent cell-mediated cytotoxicity (ADCC).

Complement Activation

Complement is an important component of the innate immune response and plays a major role in clearing damaged cells and invading pathogens. , The complement pathway is composed of cell surface receptors, regulatory proteins, and soluble proteins that can interact and cleave one another to activate downstream components. The complement pathway consists of three distinct activating components: classical, lectin, and alternate pathways ( Fig. 68.4 ). All three pathways converge into a common effector phase initiated by the formation of a C3 convertase, which results in the formation of the membrane attack complex C5b-9 that precipitates cell lysis. The classical pathway is activated when C1q binds to IgG or IgM antibodies present within immune complexes. The general order of complement fixing activity for antibodies is IgM>IgG3>IgG1>IgG2>IgG4. IgE antibodies are noncomplement fixing, whereas IgA can activate the alternative but not classical pathway. The binding of C1q to complement-fixing antibodies leads to interactions with the serine proteases C1r and C1s, allowing for the cleavage of C4 and C2, and the formation of the multiprotein complex and C3 convertase, C4b2a. The classical pathway plays an important role in antibody-mediated rejection. C4d staining, as used in the diagnosis of antibody-mediated rejection, is a read-out of C4 cleavage and considered a good marker of classical pathway activation. The lectin pathway is activated by the interaction of mannose-binding lectin (MBL), ficolins, and collectin-11 with carbohydrate pathogen-associated molecular patterns (PAMPs) and DAMPs, both of which can be expressed on the surface of pathogens or damaged cells. Like the classical pathway, the lectin pathway leads to the formation of the C4b2a C3 convertase and is therefore an additional source of positive C4d staining. Lastly, the alternative pathway is activated in circumstances where soluble inhibitors cannot keep basal C3 hydrolysis in check, therefore allowing for interactions among C3, factor B, and factor D. This leads to the formation of the C3 convertase C3bBb. Increased activation of the alternative pathway occurs in the presence of various factors associated with tissue injury including extracellular vesicles, activated platelets, and endotoxins. C3 convertases (either C4b2a or C3bBb) cleave C3 into C3a, which has proinflammatory and chemotactic functions, and C3b, which in turn cleaves C5. This leads to the formation of C5a, another potent chemotactic and proinflammatory mediator, and C5b. The latter interacts with distal complement components C6 to C9, leading to the formation of a lytic complex, namely C5b-9, that creates a pore in the plasma membrane of the target cell.

Fig. 68.4

The complement cascade.

The complement system is activated by one of three major pathways: classical, lectin, or alternative. The classical pathway is triggered by C1 binding to immune surveillance molecules, such as IgG, IgM, C-reactive protein (CRP), or serum amyloid protein (SAP), which are attached to the target sequence. The LP is triggered by the binding of collectins, such as MBL and collectin-11, or ficolins to carbohydrate residues on a pathogenic surface or IgA and IgM molecules. The alternative pathway is initiated by direct binding of C3b to activating surfaces. All three pathways converge at the production of the central complement component C3. That is, all pathways form enzyme complexes (classical or alternative convertases) that cleave either C3 (into C3a and C3b) or C5 (into C5a and C5b). C5b triggers the terminal pathway by creating a pore in the target cell membrane via the formation of the membrane attack complex (C5b-C9). Soluble complement effectors C3a and C5a are detected by specific cell receptors, thereby promoting inflammation. Complement inhibition occurs via a variety of molecules ultimately inhibiting C3 and C5 convertase or blocking the formation of the membrane attack complex (C5b−C9).

From Sacks S et al. Complement recognition pathways in renal transplantation J Am Soc Nephrol. 2017;28:2571–2578, fig. 1.

A number of soluble regulatory molecules can keep complement activation in check. Factor H accelerates degradation of key components of the alternative pathway and serves as a cofactor for factor I. The latter accelerates degradation of C3b and C4b. C1 esterase inhibitor and C4b binding protein interfere with activation of the classical pathway. Cell membrane regulatory proteins include decay-accelerating factor (DAF, CD55), membrane cofactor protein (CD46), CD59, and CR1 (CD35). During antibody-mediated rejection, DSA and autoantibodies interact with antigens present on the microvascular endothelium, leading to complement activation, which in turn triggers lytic injury and inflammation of the microvasculature.

Antibody-Dependent Cytotoxicity

Interactions between antibodies and cognate antigens also favor the recruitment and activation of innate immune effectors that express Fc receptors, such as monocytes, macrophages, DCs, and NK cells. There are three classes of Fc receptors, FcγRI (CD64), FcγRII (CD32), and FcγRIII (CD16), the latter two of which both have A and B isoforms. All Fc receptors, except FcγRIIIB, are activating. NK cells and innate types of lymphoid cells are considered central effectors of ADCC. They express FcγRIIIA in the absence of inhibitory FcγRIIIB. , Binding of antibodies to Fc receptors activates NK cells, leading to the release of cytotoxic granules such as perforin/granzyme B. Renal biopsies from transplant patients with DSA show higher NK cell transcripts and increased numbers of NK cells within peritubular capillaries.

The Emerging Role of Autoantibodies In Transplantation and Rejection

DSA have classically been involved in most cases of acute and chronic antibody-mediated rejection (AMR). However, AMR has also been documented in patients who do not have circulating DSA. , Mounting evidence points to the role of non-HLA antibodies as important contributors to AMR. The most recent versions of the Banff classification system now recognize that, in addition to the presence of DSA, antibodies targeting other donor antigens can be considered as one of the diagnostic criteria for acute or chronic AMR. Non-HLA antibodies encompass two types of antibodies: those directed at non-HLA polymorphic antigens that differ between the donor and recipients (e.g., MHC I-related chain gene A [MICA]) and autoantibodies (e.g., antiendothelial cell antibodies, antiangiotensin II receptor type 1 [AT 1 R-Abs], and antiperlecan/LG3 antibodies).

MICA is located within the MHC I region of human chromosome 6. The MICA protein is highly polymorphic, has an extracellular domain, and is constitutively expressed on endothelial cells. Its expression has been documented in kidney graft biopsies. Pretransplant MICA antibodies have been associated with AMR and decreased graft survival in renal transplant patients in some but not all studies. Similarly, the detection of anti-MICA antibodies post transplant has been linked to an increased risk of AMR, , chronic rejection, and decreased graft survival , in some, but not all, studies. In addition to studies yielding discordant results, whether the anti-MICA antibodies identified are specific to the donor has rarely been assessed. Hence the association between anti-MICA antibodies and graft outcomes requires further study.

The proximity of donor endothelial cells to the recipient’s immune system makes endothelial antigens likely targets for antibody-mediated injury. Antiendothelial cell antibodies (AECAs) have been detected in pre–kidney transplant patients, regardless of whether they are HLA-sensitized or desensitized. Hyperacute rejections involving AECA but not anti-HLA DSA have been described, suggesting that these antibodies can be pathogenic. The appearance of de novo, post-transplant AECA has been linked to adverse graft outcomes, , although the relevance of pretransplant AECA on graft outcomes is controversial. , , , These discrepancies may stem from the variability in the methods used to measure AECA and the lack of standardized assays.

An increasing number of autoantibodies of relevance in transplantation are being described including anti-AT1R, antivimentin, antiperlecan/LG3, antiendothelin 1 receptor and natural autoantibodies reactive against apoptotic Jurkat cells. , Agonistic autoantibodies against angiotensin II receptor type 1 (AT 1 R-Abs) have been associated with acute vascular rejection in DSA-negative renal transplant patients. The passive transfer of these autoantibodies in an animal model reproduced the phenotype observed in transplant patients, demonstrating the pathogenic impact of these autoantibodies. Many, but not all, studies have shown that the presence of pretransplant AT 1 R-Abs is associated with an increased risk of rejection and graft loss.

Autoantibodies against components of the vascular basement membrane such as the LG3 fragment of perlecan or agrin , have been associated with acute vascular rejection, transplant glomerulopathy, and increased risk of delayed graft function and reduced allograft survival. , , Passive transfer of antiperlecan/LG3 in an animal model of vascular rejection increased vascular inflammation, confirming the pathogenic role. Similarly, de novo and pretransplant levels of antifibronectin and anticollagen type 4 autoantibodies were linked to transplant glomerulopathy in kidney transplant patients. Autoantibodies reactive with apoptotic Jurkat T cells have also been associated with an increased risk of acute and severe rejection and reduced long-term renal allograft survival. , , , Better standardization of autoantibody assessment will be required for these to inform care.

Interactions Between Alloantibodies and Autoantibodies

Autoantibodies have been shown, in animal models and in patient studies, to enhance the effect of alloantibodies. Indeed, kidney transplant patients with abnormal kidney biopsies positive for both AT 1 R-Abs and DSA tend to experience a higher risk of graft loss compared with those who were only DSA positive. , A similar association was found in patients with DSA and antiperlecan/LG3 antibodies. Although mechanistic pathways for non-HLA antibodies have not been studied to the same extent as anti-HLA antibodies, they may also cause graft injury through the activation of complement and/or the promotion of leukocyte interaction/activation. , , , In addition, AT 1 R-Abs mediate endothelial cell activation and vasoconstriction by binding to the second extracellular loop of the angiotensin II receptor type 1 protein. Use of AT1R blockers and plasma exchange have been shown in various studies to alleviate the deleterious impact of anti-AT1R on the renal allograft.

Histocompatibility Testing for the Kidney Transplant Candidate and Recipient

In the previous section, we discussed mechanisms of allorecognition and effectors pathways inducing allograft rejection. Because HLAs are the most important foreign antigens recognized on kidney allografts, this section covers the topic in greater depth, focusing primarily on clinical translation of HLA basic science into clinical testing considerations. The Histocompatibility Laboratory (HLA Laboratory) can be considered as the site of applied transplant immunobiology. The HLA Laboratory offers clinical immunologic risk consultation, with the purpose of estimating immunologic risk throughout transplant assessment, consideration of potential donor(s), and the post-transplant period. Indeed, since the first clinical histocompatibility testing was defined in 1969, the HLA Laboratory has grown to play a critical role in transplant decision making and organ allocation. Histocompatibility testing (henceforth called HLA testing) focuses predominantly on assessing the humoral branch of the alloimmune response and does not routinely assess directly for activity within or risk associated with the cellular compartment of the immune response. Notwithstanding the clear interplay between cellular and humoral alloreactivity, there is a clear and strong association with measurement of both histocompatibility and the humoral response and clinical outcomes (AMR, transplant glomerulopathy, and premature graft loss). Hence precise and thorough delineation of the presence and risk of memory and de novo humoral alloreactivity to nonself HLA antigens is required. This section focuses on the most common platforms of testing utilized in the modern HLA laboratory, as well as their strengths and limitations. We describe how these platforms can support humoral immunologic risk assessment that can be translated into clinical action with the goals of increasing transplant access and reducing allograft damage related to immunologic incompatibility, optimizing both equity in access to transplantation and utility of organs once transplanted, especially for the sensitized patient. As discussed in the previous section, antibodies to non-HLA antigens may also be correlated with worse allograft outcomes or augment the risk portended by HLA antibodies. At present, routine screening for these non-HLA antibodies is not common in clinical programs but may occur on a case-by-case basis.

Three testing platforms have formed the core of clinical transplant immunologic testing for more than 40 years: HLA typing (of alleles with determination of their corresponding antigen[s]), HLA antibody screening and identification, and donor-specific crossmatching. Over time, there have been significant advances in the methods themselves; however, the foundational principles of using their results in context to quantify donor and recipient HLA antigen differences, as well as HLA antibody reactivity to potential donor(s), remain unchanged. We will focus on the most current methodologies here, with mention of historical, largely obsolete methods, only briefly for reference in the context of interpreting older literature based on these tests. This section will concentrate on the three core HLA testing methods, their interpretation considerations, their limitations, and their practical utilization in clinical transplantation.

Human Leukocyte Antigen Typing

Outside of transplantation, HLA antigens are themselves the antigen-presenting molecules, alerting the immune system to foreign peptides (e.g., infectious- or malignancy-derived peptides). Significant diversity in the HLA repertoire is beneficial for ensuring effective vigilance against environmental threats within and between populations. However, it is this diversity that gives the HLA antigen its potent immunogenicity in transplantation, cognizant that the immune system cannot distinguish the threat potential of an infectious agent from that associated with a foreign HLA antigen on a transplanted organ. Indeed, there are more than 37,000 unique HLA alleles coding for more than 20,000 distinct HLA proteins reported across the human repertoire. Each person has up to 18 unique HLA proteins on the surface of nucleated cells. In sibling relationships, HLA identity can occur by chance in 25% of pairs through Mendelian inheritance of the short arm of chromosome 6 where the HLA proteins are coded. Outside of this familial relationship, complete HLA identity between randomly selected donors and recipients is rare. Hence in most cases, the goal of HLA typing is not to find HLA identical donor–recipient pairs but to quantify the degree of difference between donors and recipients (as one estimate of the stimulus of the alloimmune response) and to determine if a recipient carries HLA antibodies specific to a given donor, directing clinical decision making accordingly. Indeed, any degree of mismatch between a donor and a recipient can stimulate an alloimmune response in the absence of enough immunosuppression, leading to subclinical and clinical rejection.

Human Leukocyte Antigens

HLA class I molecules (HLA-A, B, C) are found on the surface of all nucleated cells, whereas the expression of HLA class II molecules (HLA-DR, DRw, DQ, DP) is limited to B cells, APCs, and activated endothelial cells. The expression of class II molecules on endothelial cells is particularly important in the transplanted organ that may undergo injury during or after transplantation, upregulating these important immune targets. Class I molecules are composed of a polymorphic chain encoded by the HLA class I gene, supported by a monomorphic β2-microglobulin. As such, the immunogenicity of the class I molecule is defined by the polymorphism in this single chain. Conversely, although the three-dimensional structure of class II antigens is similar to class I ( Fig. 68.5 ), their amino acid configuration is different—the molecule comprises two distinct chains (alpha and beta), each with inherent polymorphisms. The molecule’s immunogenic potential in transplantation is therefore present within each amino acid chain, but also with additional immunogenicity potential at the interface of the α and β chains. It is in this complex and polymorphic structure of the HLA molecules that the immunologic challenges of transplantation begin: Even single amino acid differences between a donor and recipient HLA, if sufficiently different in charge, size, or polarity, can trigger alloimmune pathways in the recipient.

Fig. 68.5

Structure of HLA genes and molecules.

The HLA genes are encoded on the short arm of Chromosome 6. A, Class I HLA molecules have a polymorphic alpha protein chain (heavy chain) non-covalently linked to a smaller light protein: a momomorphic B 2-microgloblulin. The alpha 1 and alpha 2 domains flank a beta pleated sheet in the peptide binding cleft, forming the immunogenic part of the molecule. A monomorphic (nonimmunogenic) B2-microgloblulin is encoded in chromosome 15 and supports the alpha chain. B, HLA class II molecules consist of two unique heavy alpha and beta protein chains. The two most distal domains (α1 and β1) mimic the class I α1 and α2 domains in forming the peptide-binding cleft DP and DQ molecules have polymorphic alpha and beta chains, such that allorecognition can occur with the alpha and beta chains individually as well as at with unique alpha beta combinations. For simplicity, the trans-membrane (TM) and Cytoplasmic (CYT) protein structures are not shown. Areas potentially subject to antigen-antibody interaction at regions of polymorphism/epitope differences are circled in black. The DQ and DP class II molecules are notable in that antibody can also form and bind to the unique combination of the alpha and beta chains.

From Lapointe I, Tinckam K. Histocompatibility testing for kidney transplantation risk assessment . Scientific American Nephrology, Dialysis and Transplantation. ©Decker Intellectual Properties, Inc. 2017. With permission.

Human Leukocyte Antigen Typing Methods

Serologic methods

Historically, HLA antigens were identified using common serologic methods. Sera containing HLA antibodies of both single and multiple specificities to broad groups of HLA antigens were obtained from sensitized patients (usually multiparous women) and specifically chosen in combination in panels to cover the most common HLA antigen types in a population. The lymphocytes of the individual to be typed were then mixed with all serum samples in the panel in the presence of complement and a vital dye. If the sera in each reaction resulted in cell death through complement-induced injury visualized by vital dye uptake, it could be inferred that the antibody(ies) in that serum had specificity(ies) to one or more HLA antigens on the cell surface. Careful examination of the pattern of positive reactions across the test sera would yield the predicted HLA antigens on the lymphocytes being tested.

Molecular methods

Several molecular methods have been developed to better characterize HLA antigens by determining more precisely the HLA alleles that encode them and, in doing so, more accurately identify the amino acid differences between different HLA antigens (and indeed even between different alleles within the same antigen group). Currently used methods use polymerase chain reaction (PCR) platforms, and options include real-time PCR (rtPCR), sequence-specific primer (SSP) methods, the reverse sequence-specific oligonucleotide (R-SSO) probe method, Sanger-based sequencing, and, most recently, next-generation sequencing. It warrants mention that the sequencing methods are not practically suitable for deceased donor typing, as they can take several days to complete; these are more commonly employed for recipient typing and living donor typing when used. Conversely, rtPCR, SSP, and SSO methods are more commonly used for deceased donor typing because their rapid turnaround times facilitate prompt transplant decision making in allocation. A novel approach, using long-read nanopore sequencing, minimizes inaccuracies introduced when assembling short sequence reads. Given sufficiently rapid turnaround time, resolution of shortcomings in read analysis and interpretation could offer the promise of high-resolution HLA genotyping for deceased donor transplants in the future. The details of each method are not reviewed here, as methods are in rapid evolution and chosen in the context of what is appropriate for a given program’s clinical needs. Readers are directed to their own HLA laboratory for a more complete review of the local methods used. Regardless of the specific molecular platform employed, molecular methods as a group allow for a more precise determination of HLA alleles and their corresponding immunogenicity, where serologic typing would fail to identify many of these small but important differences.

Interpreting Human Leukocyte Antigens Typing Results

Nomenclature—alleles and antigens

Molecular methodology for HLA typing uses a precise nomenclature to identify HLA alleles; it uses a letter to identify the locus (A, B, C, DRB1, DRB3/4/5, DQA1, DQB1, DPA1, DPB1), an asterisk, which confirms that molecular methods were used, and then a series of numbers separated by colons (called field separators) to identify precisely the unique allele. For example, HLA-A∗03:01:01:02N refers to a molecular defined allele at the A locus, followed by four unique fields, each of which has a precise meaning. Field 1 (in this example 03) identifies the allele group. Field 2 (in this example 01) identifies a precise allele, with at least one amino acid difference in the mature protein that distinguishes it from all other alleles in the allele group. Field 3 (in this example 01) identifies if the genotype of the allele contains a synonymous DNA substitution in a coding region that does not alter the final protein structure, and field 4 (in this example 02) indicates a difference in DNA sequence in a noncoding region of the gene. Additionally, a suffix may be appended to the allele name (in this example N), indicating a variant of expression of the final protein product, where N represents Null or No expression; L indicates Low expression; S indicates a molecule that is Secreted and Soluble but not present on cell surfaces; C is assigned to alleles producing products only detected in the Cytoplasm; A indicates Aberrant expression, where the expression is not confirmed; and Q is assigned to Questionable, where the impact of the mutation on expression is not confirmed but has been seen in other alleles.

For practical purposes in solid organ transplantation, only the first two fields have clinical impact insofar as they determine the protein to be considered in mismatching and antibody production. In addition, the N or L suffix is important in transplantation, as where a protein has null or low expression, it may not have any (null) or reduced (low) relevance in immunogenicity or antibody specificity considerations. Indeed, most commonly at present, molecular typing in kidney transplantation is reported at only the first field level unless the specific allele is needed to quantify differences between a donor and recipient or to interpret a specific antibody pattern as donor specific or not.

Molecular typing nomenclature also permits a more accurate description of the complexity of the class II DQ and DP proteins, where the antigen is named only for the β chain, but the immunologic relevance of the molecule requires identification of the α chain distinctly and in combination with the β chain ( Fig. 68.5 ). Indeed, the authors recommend to always identify DQ and DP antigens by both their α and β chains to properly describe the encoded final protein and any antigen–antibody interactions involving the α chain. The DRA1∗ chain is not sufficiently polymorphic such that naming the DR antigens in accordance to their β chain allele is immunologically enough. Stated in other terms, HLA-DR dimers share an α chain that is essentially invariant.

By way of comparison, HLA antigens (serologically determined) are identified by the locus (with no asterisk) and a single number that indicates the specific protein being expressed (e.g., A2 and B27). This format specifically indicates a protein rather than an allele and, in fact, represents the group of all A2 proteins; that is, the protein product of all the HLA-A∗02 alleles. This nomenclature is particularly important because whenever HLA antibodies are identified (see later), the antibody is most typically named for its target antigen using antigen nomenclature. Generally, the gene group from the molecular name and the antigen number are both familiar and similar (e.g., HLA-A∗02 gene group codes for A2 proteins and HLA-B∗27 group codes for B27 proteins). However, there are some exceptions noted ( Table 68.1 ). Typically, in these cases the molecular typing is followed by the relevant antigen in parentheses (e.g., HLA-DQB1∗03[7]), where the DQB1∗03 gene codes for DQ7 protein.

Table 68.1

Common Human Leukocyte Antigen Genes with Multiple Human Leukocyte Antigens Associated

Human Leukocyte Antigen Gene Antigens Encoded By Gene
HLA-B∗14 B64 or B65
HLA-B∗15 B62, B63, B71, B72, B75, B76, or B77
HLA-B∗40 B60 or B61
HLA-C∗03 Cw9 or Cw10
HLA-DRB1∗03 DR17 or DR18
HLA-DQB1∗03 DQ, DQ8, or DQ9

Matching and mismatching of alleles, antigens, and epitopes

Donors and recipients may be compared by identifying the differences between their HLA antigens and alleles; however, directionality is critical in describing this accurately. Biologically, the most relevant comparison in transplantation is to describe the donor differences to the recipient from the perspective of the recipient’s immune system and the donor antigen or allele differences in terms of the number of mismatches in the host versus graft (HvG) direction. This is particularly important when either the donor or recipient is homozygous for one or more HLA antigens or alleles ( Table 68.2 ). Newer analytic methods assessing molecular compatibility between donors and recipients, among which HLAMatchmaker and the PIRCHE score are most commonly used, also allow laboratories to compare allele and antigen differences from a donor to a recipient and also identify and count the number of eplet (amino acid differences at positions with immunogenicity potential) and epitope (structure surrounding the eplet where the Fab′ can bind) differences, typically expressed as the identity of these molecular or amino acid polymorphisms and the total number of different eplets or eplet “load.” Methods such as these can also identify specific eplets that are different between donor–recipient pairs that may have greater immunologic relevance.

Table 68.2

Human Leukocyte Antigens Mismatching Considered From The Perspective of The Recipient Immune System

Molecularly determined alleles at each human leukocyte antigen (HLA) locus in recipient and donor in two different scenarios (upper and lower section of table), showing the number of mismatches. In the case where either a recipient or donor is homozygous for 1 or more antigens, there is a difference in mismatches depending on which direction the mismatches are considered. In the first example, considering the foreign HLA donor, antigen burden yields 10 mismatches in the host versus graft direction. However, if the donor and recipient had the opposing HLA typing, it would give a total of 13 mismatches from the perspective of this recipient.

Human Leukocyte Antigen Locus A∗ B∗ Cw∗ DRB1∗ DQA1∗ DQB1∗ DPA1∗ DPB1∗ Total Mismatches
Recipient 11
24
15(62) 15(75) 04
08
12
14
06:01
03:01(7)
01:03
02
02:02
21:01
Donor 2
46
52
01
14
09
03
03:03(9)
02-
05:01
09:01
Mismatches 1 2 2 1 1 1 0 2 10
Recipient 2
46
52
01
14
09
03
03:03(9)
02-
05:01
09:01
Donor 11
24
15(62) 15(75) 04
08
12
14
06:01
03:01(7)
01:03
02
02:02
21:01
Mismatches 2 2 2 2 1 1 1 2 13

Limitations of human leukocyte antigen typing methods

Serologic methods identify only the broadest of HLA antigens at their most common and strongest humoral targets; they do not distinguish, in most cases, between small but immunologically important differences that may be present at alleles within the same antigen group. This is particularly relevant when HLA antibodies have only a subset of allele-coded proteins within a group (allele-specific antibodies) as their target. In addition, serologic methods only commonly identified with any accuracy the A, B, and DR proteins, giving rise to the paradigm that these six antigens were the most significant in transplantation. This paradigm is now accepted as inaccurate. The authors encourage the reader to interpret any historical data limited to HLA-A, B, DR typing with caution, considering modern-era data supporting the immunogenic role of proteins from the other 11 HLA loci as influencing clinical transplant outcomes. Molecular methods, in general, have advanced the understanding of HLA diversity and its contribution to alloimmunity, but different platforms have different levels of typing resolution and all are under rapid evolution such that any specific discussion of limitation would shortly be obsolete. At present, the major limitation to some methods that result in a high level of resolution is that several days may be required to obtain a result, which is prohibitive in deceased donor transplantation workup and allocation; this, however, is anticipated to change with the rapid improvement of methods and platforms. Rather, when interpreting molecular results, the clinician should be sure to note whether allele-level typing (second field resolution) is necessary to interpret immunologic risk, either at the molecular level or antibody–antigen interaction level. Consultation with histocompatibility specialists should be sought out to determine the level of resolution needed in any given case.

Using Human Leukocyte Antigen Typing Results in Kidney Transplantation

Interpreting the transplant candidate’s antibody profile

The first step in evaluating a transplant candidate is to determine their own HLA allele and antigen profile using the highest resolution typing available in that center. This information is useful immediately, well before a donor is under consideration, as the recipient’s HLA antibody profile must always be interpreted in the context of their own HLA typing to ensure that the antibodies identified are as accurate as possible (cognizant that one does not normally make HLA antibody to self-HLA antigens or self-epitopes). These considerations are crucial for accurate antibody interpretation, and sufficient resolution of recipient HLA typing is thus of utmost importance. Furthermore, in highly sensitized patients, understanding the population frequency of the candidate’s own HLA alleles and haplotype can aid in the estimate of donor access (likelihood to receive a donor organ), with those patients who have rarer HLA alleles potentially having an even further reduced access compared with those with more common HLA phenotypes.

Clinical estimate of immunogenicity of human leukocyte antigen mismatches

The number of HLA mismatches between donor and recipient was one of the first recognized predictors of transplant outcome as early as 3 years post transplant, even in the early days of transplantation, when typing was only resolved at the serologic level and assessment was limited to only a few loci. With improved immunosuppression, the impact of mismatching at the antigen level was reduced, and its role in allocation correspondingly diminished. , Studies using larger data sets and performed in the era of modern immunosuppression, with a view to longer-term clinically relevant outcomes, however, still show that donor–recipient HLA mismatching, even at the antigen level, can have a deleterious impact on graft survival. Notably, however, all HLA antigens are not equally different at the eplet/molecular level, and simply considering the integer difference in mismatches is at best a crude estimate of immunogenicity ( Table 68.3 ). Eplet analysis is a more granular and biologically relevant estimate of immune differences at the level of the HLA molecule. Early data support this strategy with HLA eplet load being strongly associated with both de novo DSA development , and clinically relevant outcomes, such as transplant glomerulopathy. It is further recognized that not all HLA eplets are immunologically equivalent. As such, though better, eplet load is itself also only an estimate of immune difference. There is much interest in determining which eplet differences carry the greatest risk of adverse outcome, , but such data require validation with large multicenter datasets with unambiguous allele-level donor and recipient genotyping.

Table 68.3

Quantifying Human Leukocyte Antigens Versus Eplet Mismatches

Human Leukocyte Antigen Locus A∗ B∗ Cw∗ DRB1∗ DQA1∗ DQB1∗ Total Mismatches
Recipient 01:01
03:01
07:02
08:01
07:01
07:02
03:01
13:09
01:03
05:01
02:01
06:03
Donor 02:01
11:01
44:02
54:01
03:01
05:01
01:01
04:05
01:02
03:01
06:–2
03:02
HLA antigen mismatches 6 4 10
Eplet mismatches 35 51 86
Recipient 01:01
24:02
51:01
35:01
07:01
01:02
03:02(18)
07:01
03:01
04:01
02:02
04:02
Donor 23:01
36:01
52:01
53:01
15:02
18:01
03:01(17)
11:04
05:01
02:01
03:01
HLA antigen mismatches 6 4 10
Eplet mismatches 4 23 27

HLA antigen mismatch is only a crude estimate of the degree of mismatch between donors and recipients. In these examples, despite the same number of class I and class II antigen mismatches, the first pair has almost 3 times the number of eplet mismatches (not shown), representing a more potent alloimmune stimulus.

As mentioned earlier, the role of HLA matching in allocation has been reduced in many jurisdictions. This is both because of the reduced impact on short- and medium-term outcomes, as well as concerns about creating biases against individuals of certain races/HLA phenotypes, where their group’s HLA antigens are less commonly found among typical organ donors. There is insufficient evidence available at this time to allocate organs strictly based on eplet load or eplet matching. However, this may evolve with newly emerging data. How then should the clinician interpret HLA mismatch data at the antigen, allele, or T-/B cell epitope level ? It is important to acknowledge that if the mismatches in a given pair are greater, then the immunologic potential for alloimmune recognition and response is also greater. The clinician should use this information to refine the risk assessment along a continuum. Higher-risk states may warrant greater vigilance in follow-up (lab tests, HLA antibody monitoring) or greater caution in reducing immunotherapy.

Avoidance of unacceptable donor antigens/alleles

Foundational to modern organ allocation is evaluating donor HLA typing in the context of a recipient’s HLA to identify if there are any DSAs. This is commonly referred to as virtual crossmatching (VXM), where positive DSA is interpreted as a positive VXM and the absence of DSA is a negative VXM. This is discussed in more detail in the section on virtual crossmatching later. From the perspective of HLA typing, it is critical that donor typing be performed at all loci to which a recipient has detectable anti-HLA antibodies, using enough resolution (up to 2 field) to evaluate allele-specific antibody relevance.

Donor data supporting panel reactive antibody calculators

Foundational to the estimate of calculated panel reactive antibody (cPRA) , (see section later) is a database of many deceased donor HLA typings to which an antibody profile can be compared. It is essential that these data sets be large and as complete at all loci as possible so that the calculation of cPRA is immunologically relevant and accurately informative of access to blood group and HLA compatible donors.

Clinical Relevance

The authors encourage the reader to rely on allele-level (second field) HLA types when estimating immunologic risk (e.g. molecular incompatibility and donor-specific antibody verification) and refrain from relying on outdated practices that consider only HLA-A, B, and DR typing. Consultation with histocompatibility specialists should be sought to determine the level of HLA typing resolution needed in any given case.

Human Leukocyte Antigen–Antibody Screening and Identification

Sensitization occurs when an individual is exposed to nonself HLA epitopes via pregnancy, prior transplant, or blood transfusion. As a result of sensitization, a significant proportion of individuals can develop HLA antibodies: 50% to 74 % in pregnancy, 1% to 20% of transfusion-exposed patients, and 45% to 80% of patients with prior transplants. A small percentage of patients also appear to have some HLA antibodies in the absence of a sensitizing event, but the clinical significance of these antibodies remains questionable.

The detection of HLA antibodies before transplantation and their precise specificities (the exact antigens to which they are expected to bind) allows estimation of the percentage of available donors to whom they may have DSAs. Further, this allows estimation of access to transplantation because of the antibody profile. At the time of considering a potential donor, the recipient HLA antibody specificities can be examined for DSAs to those of the donor in order to make a more precise immunologic risk assessment and inform decisions to proceed with transplantation, as DSAs portend a higher risk of humoral immune complications post transplant.

After transplantation, the development of de novo DSA carries a particularly deleterious prognosis and is strongly associated with poor outcomes, in both the short and long term for graft survival. Patently clear, however, is that both sensitive and specific antibody detection, as well as identification methods, are critical in guiding both the interventions and treatments for better outcomes, at all times during the transplant patient lifecycle.

Antibody Detection and Identification Methods

Serology

The term panel reactive antibody (PRA), broadly used to describe the percentage of donors in a candidate donor population to whom a recipient may have DSA, comes from the original serologic methods for detecting HLA antibodies. PRA testing involves exposing a panel of various cells from different donors (selected to represent the common HLA frequencies in a potential donor population) to a recipient’s serum, to which complement and a vital dye are added. The percentage of the cells in the panel that are lysed is an estimate of the percentage of donors from that population against whom the recipient has cytotoxic antibodies (IgG1 or IgG3 of sufficiently high titer to initiate the complement cascade). Due to the limitations of serologic screening including lack of sensitivity, limited specificity with high false-positive rates due to non-HLA antibodies, IgM, and autoantibodies (which are immunologically irrelevant) and volatility of the PRA estimate based on cell panel phenotype variation, regardless of recipient serum changes, this method is not further discussed.

Solid-phase human leukocyte antigen–antibody screening

In these assays, purified HLA antigens are covalently bound to inert beads or less commonly to an ELISA platform. The latter has been largely replaced with bead-based assays due to their increased sensitivity and capacity for high-volume testing and is not further discussed. In screening solid-phase assays, beads carry the complete class I or class II HLA profile of an individual and can be detected when the antibody in serum binds, regardless of complement activation, with a secondary fluorescent anti–human IgG detector antibody on a flow cytometric platform. A bead is determined to be positive when its fluorescence is above the threshold level validated by the laboratory and manufacturer. The PRA estimate, in this case, stratified by class, is similar in principle to serology methods as the percentage of total beads with positive fluorescence.

Solid-phase human leukocyte antigen–antibody-specificity testing

Although PRA testing yields a population-based estimate of the number of donors to whom a recipient may have DSA, for these to be used in transplant decision making and donor selection, greater detail is needed as to which precise antigens the antibodies are directed toward. Single antigen beads (SABs) are similar in platform to HLA solid-phase screening assays, but in this case, each bead has only one distinct type of HLA antigen bound. Also analyzed on flow cytometric platforms, up to 100 unique beads per class can be tested simultaneously. The output of this test is also fluorescence based and defines a list of antibody specificities that then must be reverse engineered into a cPRA using a calculator informed by large numbers of donor genotypes. , ,

Complement-binding solid-phase assays

These assays are derived from the classic SAB test and instead of simply detecting any antibody bound to the bead’s antigens, they are designed to detect the binding of C1q or C3d complement by HLA-specific antibody. Complement-binding DSA are associated with an acute rejection phenotype that is more severe and with an increased risk of allograft failure compared with non–complement-binding DSA. , These assays will only be positive if IgG 1/3 antibodies are also first bound in sufficient density (high concentration) to antigens on the bead surface. , , If low-titer IgG 1/3 antibody is present or IgG 2/4 isotypes dominate the serum antibody profile, then the result will be negative. Isotype-specific assays can also be used to discriminate between all four isotypes within a given SAB reaction and infer similar complement-binding potential but are not commonly used in routine clinical practice. It is notable that almost all antibodies that are detectable on traditional SAB platforms are present in all four isotypes, , suggesting that complement activation is at least possible for all antibodies, and its detection is dependent largely on titer of the IgG1/3 components. ,

Nonhuman leukocyte antigen antibodies

Though not yet routinely implemented in all labs as a part of standard testing, commercial assays are now available for several non-HLA antibodies including endothelial antibodies, , MICA, , and angiotensin type 1 receptor antibodies , in renal transplantation. These assays are also solid phase based with correspondingly similar methodologies as other solid-phase assays. The incremental additional value of these tests for population screening remains uncertain , and their current utilization potential is determined at the individual patient level.

Interpreting Solid-Phase Human Leukocyte Antigen–Antibody Tests

General interpretation

The numeric output from both screening and SABs is mean fluorescence intensity (MFI), which is compared with both negative control bead and negative control serum fluorescence to identify whether a given bead is of sufficiently high fluorescence to be deemed positive. It is important to note that although MFI output is numeric, it should not be interpreted as quantitative or an equivalent to antibody titer (see “Limitations of Human Leukocyte Antigen–Antibody Testing” later). Other factors can and should be considered in determining the relevance of a given bead reactivity, including sensitization history (and HLA type[s] of the sensitizer[s], if available), a pattern of shared eplets or a known Cross Reactive Group among beads deemed to be fluorescing that would support their positivity as biologically plausible from an antibody-eplet binding perspective, a change in reactivity pattern over time with historical sera (where a bead representing an antigen of interest and previously lower ranked in the assay MFI is now relatively increased, even if below usual thresholds for positive), interval changes in immunosuppression treatments, the presence of autoimmune disease with antibody binding to denatured antigens in the SAB assay, and the administration of any agents that could increase background interference. Once the determination of the list of positive beads has been made, further analysis of these positive reactions is required to determine the list of antibody specificities.

Antibodies reported at the antigen level

Antibodies are identified most commonly as specific to HLA antigens. These are reported as lists of serologic equivalents in nomenclature (e.g., A2, B7, and DR15). The interpretation by the clinician is correspondingly that the patient has an antibody that will bind all members of the antigen group regardless of specific allele. Biologically, it is inferred that the antibody is directed toward the epitope(s) that are common to all members of the antigen group and not at the epitope(s) that would distinguish unique alleles. Additionally, for class II, although not traditionally considered antigens in their own right, antibodies can form the unique polymorphic alpha chains (coded by DQA1 and DPA1 genes). When these are identified, they will be listed with the α chain specified. For example, DQA1 or DPA2 antibody, distinct from DQ7 or DP3, which infers the antibody is to the β chain (coded by gene DQB1 or DPB1 , respectively).

Allele-specific antibodies

Although antibodies are most identified toward antigen groups, it is recognized that there are multiple different alleles comprising each antigen group. Sometimes, an antibody may be directed to one of the molecular targets (eplet/epitopes) unique to a certain allele, in which case it will typically be identified using up to four digits; for example, B5102 antibody, where this nomenclature implies an antibody binding to the protein encoded by HLA-B∗51:02 allele but not the other alleles in the B51 chain including B∗51:01 ( Fig. 68.6 ).

Fig. 68.6

Allele differences in protein structure can lead to different immunogenicity.

Proteins coded by B∗51:01 and B∗51:02 alleles differ by a 3 amino acid substitution in the peptide-binding region. Both are referred to as B51 antigens. Antibodies that bind to regions common to all the B51 antigens will bind proteins coded by all alleles in the group. Some antibodies bind only to those specific epitope region(s) that distinguish one allele from the others. These allele-specific antibodies may be identified by their four-digit names, in this example, B5102 antibody.

α/β Antibodies

Given the nature of class II molecules, it can occur that Fab′ of the antibody can bridge the polymorphic alpha and beta chains of an antigen for DQ and DP, resulting in an antibody that is specific to the unique combination of an alpha and beta chain. Wherever this occurs, the antibody is identified using some combination of the alpha and beta nomenclature; for example, DQA5-DQ2 (or similar).

Calculated panel reactive antibody (or equivalent) determination

A recipient’s list of antibodies is inherently useful in determining against which donors a recipient has antibodies. However, to estimate a better likelihood of access it is useful to understand to what percentage of donors in a population the recipient bears antibody. To determine this, the list of antibodies is compared with a database of donor typings specific to the population of interest. The percentage of donors to whom a recipient has one or more DSAs represents the cPRA , or equivalent (e.g., calculated reaction frequency or cRF in the United Kingdom). The cPRA varies not only on basis of the list of antibodies but also, and more importantly, on the loci included in the donor typing and frequency of target HLA antigens in the donor population of interest. This, in turn, is strongly related to population-based diversity. At the time of this publication, the most widely used cPRA calculators do not incorporate molecular compatibility or allele-specific antibodies.

Limitations of Human Leukocyte Antigen–Antibody Testing

Defining a positive bead

Although the output of the SAB assay is a numerical MFI on each bead, which has a unique antigen on it, the MFI alone is insufficient to determine whether or not the fluorescence on a bead represents a true antibody being detected, and no universal threshold for positive should ever be assigned. There is a widely varying density of HLA antigens between beads, such that the maximum MFI on any given bead may be determined by antigen density rather than serum level of antibody. In the presence of high levels of complement-binding antibody, C1q may be generated in vivo from soluble complement proteins and interfere with the binding of the antibody to the bead, significantly lowering the MFI of the beads, representing high levels of antibody. Dilution of serum samples when this phenomenon occurs can clearly show that MFI increases with serum dilution, confirming its nonquantitative value on the undiluted serum. Often, groups of HLA antigens share common amino acid residues (or epitopes) to which antibodies are targeted, and when the antibody to a shared target is present at a subsaturating level, it can spread across the multiple beads with antigens sharing this target, thereby reducing the MFI of any given single bead within the group. This single-bead MFI can be misleadingly low as an estimate of antibody. Similarly, some antigens that have several common alleles are represented on more than one bead in the SAB assay; again, an antibody to this antigen at an epitope shared by all alleles can be diluted across the multiple beads, lowering single-bead MFI estimate. For these and other lab-specific validation and reagent-based reasons, it is strongly recommended that the readers consult with their own laboratory as to the analytic strategies employed to decrease interference and optimally identify antibodies and thresholds for positive ( Fig. 68.7 ). ,

Fig. 68.7

Median fluorescence intensity (MFI) of single antigen bead assays has analytic limitations and cannot be used as a quantitative metric of antibody amount.

(A) An ideal test should always be able to distinguish antibody binding (blue signal) from negative control (white) with a clear threshold and no overlap between the MFI distributions. (B) Decreased density of antigen (Ag) on the surface of the bead will result in MFI measurement that underestimates the amount of the antibody present. (C) In contrast, nonspecific binding to the bead can result in artificially high background and signal MFI, with overestimation of antibody. (D) Interfering substances may prevent the detection of the antibody of interest with lower MFI. (E) Epitopes shared between different beads can dilute the amount of antibody bound to any single bead, with an erroneously low MFI on the given bead of interest.

With permission from Konvalinka A, Tinckam K. Utility of HLA antibody testing in kidney transplantation. J Am Soc Nephrol 2015;26[7]:1489–1502.

Defining immunologic relevance

A conundrum of the detection of antibody, as for all laboratory results, is that mere identification does not precisely determine relevance at that time or in the future. Whereas higher-titer antibodies, persistent (vs. transient) antibodies based on current and historical sera, and class II antibodies may be associated with worse outcomes post transplant, it would be misleading to classify these as absolute risk states but rather a continuum of risk commencing from potential immunologic risk represented by molecular incompatibility and evident memory response represented by presence of DSA detected by solid-phase assays (virtual crossmatch), flow crossmatch, and complement-dependent cytotoxicity (CDC) crossmatch, with the latter options being deemed contraindications for transplantation. Additionally, the clinical relevance of an antibody is part of a multifactorial patient and donor assessment in the context of patient history, sensitizing events, immunosuppression, current clinical status, and organ function. There are no indisputable features that clearly discriminate antibodies with more deleterious or immediate consequences from those that portend a more benign course.

Naturally occurring antibodies

SAB assays are so sensitive that reactions may be detected in individuals without any history of sensitizing events like prior transplantation, transfusion, or pregnancy. , The clinical consequences of these antibodies, the nature of their target antigen (denatured in assay vs. intact in vivo), and whether they should be avoided or considered in donor selection requires further study.

Antibody can be bound to the allograft

The SAB assay detects circulating antibodies. However, it has been shown, in individuals with a failed allograft in place, that significant antibodies may be removed from circulation and bound to the endothelium, reducing the sensitivity of the assay. Following nephrectomy, antibody levels may increase. , If an allograft remains in situ, the full antibody potential may be dampened.

Generalizability of calculated panel reactive antibody

For a cPRA to best estimate the percentage of potential donors to whom a recipient has DSA (and consequently higher immune risk to those donors), antibodies need to be accurately identified and donor typings used must represent the donor population accessible to that individual. As such, a cPRA based on one donor population may not be an accurate assessment of transplant access in other populations of varying genetic diversity and different associated HLA frequencies. In addition, the cPRA may be systematically underestimated when donor typing is not complete at loci where HLA antibodies to those loci are used in donor organ allocation decision making.

Using Human Leukocyte Antigen–Antibody Testing in Kidney Transplantation

On the waitlist

In addition to HLA typing of the recipient, waitlist HLA antibody testing is foundational to ongoing patient immunologic assessment. The main goal of waitlist testing is to estimate the transplant candidate’s access to donors from the perspective of avoiding donor antigens to whom they have antibodies. This estimate is quantified as the cPRA, where (100-cPRA) is the percentage of donors otherwise medically and ABO suitable that would be accessible to the recipient. If the candidate has a high cPRA, longer wait times and higher waitlist mortality are anticipated. In that case, strategies to improve access to more donors should be sought. If no potential living donor is available, then desensitization or deceased donor acceptable mismatch allocation strategies should be considered. If a living donor is available, then desensitization or kidney-paired donation programs could improve access. A second goal of waitlist antibody testing is to compile a longitudinal immunologic profile of the candidate; antibodies can wax and wane over time, so repeated testing is indicated (usually every 1–3 months) to ensure the most complete list of antibody potential is compiled for use at the time of a potential donor evaluation. If a patient incurs a sensitizing event, repeat testing 6 weeks after the event is recommended to capture any memory responses or de novo antibodies. It is critical to remember that patients frequently have a long immunologic history predating their entrance to the waitlist, so even repeated HLA antibody testing may not identify all antibody potential; a thorough history of sensitizing events both before and while on the waitlist remains foundational to counseling patients as to their immunologic risk post transplant. Finally, the cPRA and its contributing antibody specificities are, in and of themselves, not a measurement of immunologic risk (only risk of reduced access to HLA compatible donors); immunologic risk is a measurement unique to each donor–recipient pair under consideration based on molecular incompatibility with the donor, presence of DSA by solid-phase assays (virtual crossmatch), and/or cell-based crossmatch.

At the time of transplant offer: virtual crossmatching

In conjunction with donor HLA typing, the full history of recipient HLA antibodies may be compared with donor HLA in what has come to be known as a virtual crossmatch (VXM). If any of the current or historical specificities correspond to donor antigens, these DSA confer a positive VXM. Under optimal circumstances, the VXM is intended to be a predictor for an actual cell-based crossmatch performed on the corresponding sera to facilitate allocation and transplant decision making. However, the predictive values of VMX for actual crossmatch (XM) can vary widely depending on XM methodology and the laboratory- and program-specific parameters for identifying antibodies. The current VXM reflects the most recent serum tested before donor offer and most closely reflects the antibodies likely to be present at the time of transplant. It is associated with early and late rejections and reduced allograft survival. Conversely, the historical VXM reflects the cumulative history of DSA. When current VXM is negative but historical is positive, there is an increased risk for memory B cell reactivity after transplant and corresponding adverse allograft outcomes. Despite historical and fewer recent reports of high PRA association with adverse transplant outcomes, the ability to more precisely assess VXM/DSA has revealed that it is, in fact, DSA that drives adverse outcomes, regardless of the level of PRA directed toward third-party antibody, further improving treatment decision making. , , In some jurisdictions where regulatory requirements allow, the VXM has replaced the actual XM for many transplant decisions, with comparable transplant outcomes. , In addition, the VXM is important for the interpretation of cell-based crossmatches; confirming that a positive cellular crossmatch is immunologically relevant. (see Crossmatching later).

Post-transplant antibody monitoring

After transplantation, all HLA-mismatched patients are at risk of de novo HLA DSA development. Landmark studies in 2005 and 2007 first identified that post-transplant HLA antibodies had higher rates of graft failure than those without antibody development. , In the years since, it has become clear that de novo HLA DSA development is a major risk factor for rejection and premature graft loss. , Despite numerous studies, there is no consensus to date as to the optimal timing and frequency of monitoring.

De novo DSAs represent an important independent risk factor for antibody-mediated injury and graft failure. , De novo DSAs appear at a median of 3 to 68 months post-transplant and positive de novo DSAs are found in 6% to 38% of patients 3 years after transplantation. Class II antibodies predominate in most series. As a diagnostic tool, the presence of DSA is supportive of a diagnosis of AMR in the context of aligned pathology, , but AMR may also occur in the absence of detectable HLA DSA, often dependent on timing of testing, with antibody bound in the failed allograft , or rarely to non-HLA antibody. , , Late AMR is associated with chronic injury, Class II Ab, and lower response rate to treatment. DSA MFI thresholds do not reliably discriminate prognosis or treatment responsiveness, , nor are they a tool to determine duration of treatment as DSA frequently persists well beyond clinical and histopathologic resolution of active (or reversible) AMR. ,

As a prognostic tool, when detected before graft dysfunction or pathology of AMR, the role of de novo DSA is not clearly defined. The interval between de novo DSA detection and clinical outcome can vary widely from months to years, as can the phenotype of the outcome itself, suggesting diverse pathways of injury at play with many effect modifiers. , Data do not presently support empirical treatment for de novo DSAs in the absence of graft dysfunction and/or tissue injury evident on biopsy. At this juncture, asymptomatic de novo DSAs can best be considered a higher-risk state for future adverse events that may warrant closer patient follow-up.

Donor-Specific (Cell-Based) Crossmatching

Before the introduction of the CDC crossmatches in 1969, the phenotype of early graft loss (as hyperacute or accelerated rejection) was a recognized but largely unpredictable event. The introduction of the CDC crossmatches provided clinicians with a tool to predict early graft loss before transplantation and improved decision making. The cell-based crossmatch in general may be considered a “surrogate” transplant; rather than exposing the endothelial cells of the allograft to the recipient circulation at the time of operation, the donor lymphocytes (expressing the same HLA antigens as donor endothelium) are first exposed to recipient serum in vitro. Where HLA antibodies are detected on the surface of the lymphocytes, it is surmised that these antibodies would also bind to the allograft endothelium with deleterious consequences; the transplant can then be avoided or immunosuppression can be modified. Although supplanted by virtual crossmatching in some clinical circumstances, the cell-based crossmatch remains an important test for donor recipient compatibility immediately before transplant, especially in patients with high immunologic risk.

Crossmatch Methods

Complement-dependent cytotoxicity

This method employs the same serologic principles described for the earliest typing and antibody detection methods, where cells from the donor are mixed with recipient serum in the presence of complement and cell death detected by vital dye uptake is the marker of a positive test, detecting high-titer complement-binding antibodies likely to result in hyperacute rejection ( Fig. 68.8 ).

Fig. 68.8

Crossmatch methods.

(A) The complement-dependent cytotoxicity (CDC) crossmatch detects high-titer donor-specific antibody (DSA) when it binds to the cell in sufficient density to activate the complement cascade. The resulting formation of the membrane attack complex (MAC) results in cell death, which can be detected via microscopy with a vital dye. A positive CDC crossmatch due to human leukocyte antigen (HLA) antibody is associated with hyperacute or early accelerated rejection. (B) The antihuman globulin (AHG)-enhanced CDC crossmatch increases sensitivity for moderate-titer antibody with the addition of AHG. AHG binds to donor-specific antibody (DSA) already bound to its target antigen, allowing for activation of complement at lower levels of original DSA. The MAC will form again and kill cells with antibody bound to it, deleted under microscopy. A positive AHG-CDC crossmatch due to HLA antibody is associated with hyperacute or early accelerated rejection. (C) The flow cytometry crossmatch can detect even lower-level antibodies using fluorescence detection if the antibody is bound to the cell. Non–complement-binding antibodies are also detected using this methodology. Positive flow cytometry crossmatches may vary in strength. Strongly positive results due to HLA antibodies are associated with not only higher rates of earlier antibody-mediated rejection (AMR) but also subclinical rejection and chronic AMR. However, not all positive flow cytometry crossmatches are clearly associated with an adverse outcome, and methods to distinguish pathologic from nonpathologic antibodies are needed.

With permission from Lapointe I, Tinckam K. H istocompatibility Testing for Kidney Transplantation Risk Assessment . Scientific American Nephrology, Dialysis and Transplantation. ©Decker Intellectual Properties, Inc.; 2017.

Antihuman globulin enhanced complement-dependent cytotoxicity

By the early 1990s, a more sensitive derivation of the CDC crossmatch was achieved by adding antihuman globulin (AHG) to the test, binding any antibody on the cell surface, increasing overall antibody density, and increasing the probability that complement would become activated with lower levels of HLA antibody. These lower-titer HLA antibodies were nonetheless clinically relevant and associated with earlier antibody-mediated outcomes not predicted by the less sensitive CDC crossmatch (see Fig 68.8 ).

Flow cytometry crossmatch

With the awareness that antibody-mediated adverse outcomes could still occur with negative AHG-CDC crossmatch, the flow cytometry crossmatch (FCXM) permitted detection of even very low-level and/or noncomplement-binding antibody on the cell surface, detected by fluorescent anti–human IgG rather than complement activation (see Fig 68.8 ).

Interpreting Cell-Based Crossmatch Results

Crossmatches are performed separately on both T and B lymphocytes. T lymphocytes express class I HLA antigens, whereas B lymphocytes express both class I and class II HLA antigens. Historically, it was thought that only the T cell crossmatch representing class I HLA antigens predicted antibody-mediated early outcomes, but it is now known that endothelium that has sustained injury (e.g., ischemia-reperfusion as is common in transplantation) can also upregulate class II expression so that positive B cell crossmatches, when due to HLA antibody, can result in early accelerated rejection even when the T cell crossmatch is negative.

A positive cytotoxic crossmatch that is due to HLA antibody (see Limitations later) indicates high-titer complement-binding antibody and predicts hyperacute rejection. A positive AHG-CDC XM (with negative CDC XM) detects lower-titer complement-binding antibody and may be associated, less commonly, with hyperacute rejection or, more commonly, with early or accelerated rejection in the hours to days after transplant. Positive FCXM, on the other hand, detects both complement and non–complement-binding antibodies, and where cytotoxic crossmatches are negative, they tend to be associated with later rejection and graft loss outcomes.

Limitations of Cell-Based Crossmatch

Complement dependence for detecting human leukocyte antigen antibodies

The use of CDC XM greatly reduced but did not eliminate early accelerated rejection (false-negative test), which could result from antibodies below the level of detection by complement dependence that still caused damage to the graft endothelium in the hours to days after transplantation.

Immunologically irrelevant non–human leukocyte antigen targets on cells

False-positive results can occur from autoantibodies , or immunologically irrelevant antibodies (including IgM antibody) binding non-HLA targets. , , ,

Drug interference

Patients awaiting transplantation may be treated with antibodies that can interfere with crossmatch testing. Antibodies that are known to interfere include antithymocyte globulin (ATG, a polyclonal antibody that can bind to antigens on T and B cells), alemtuzumab (binds to CD52 on T and B cells), rituximab (binds to CD20 on B cells), and daratumumab (binds to CD38 on B cells or T cells).

B cell false-positive crossmatch

The BCR includes constitutively expressed immunoglobulin that can increase the likelihood of a positive B cell crossmatch in the absence of donor-specific HLA antibody. Laboratories routinely account for this by setting cutoffs for positivity and by using Pronase, a commercially available mixture of bacterial proteases, in flow cytometry crossmatching, which can improve the crossmatch specificity.

Increasing sensitivity may reduce predictive value

With increasing sensitivity of diagnostic methods, there tends to be decreased specificity. Additionally, the implication of using more sensitive tools is that a positive test result infers a lower immunologic risk and consequently is not necessarily associated with inferior transplant outcomes. For example, while higher rates of adverse outcomes occur with positive FCXM in isolation, a positive FCXM does not guarantee worse transplant results, and in some cases, these transplants can be performed with short- to medium-term success in the context of augmented immunotherapy or desensitization.

Laboratory variability

The cell-based crossmatch is not a commercially available assay but rather developed within HLA laboratories frequently using nonstandard incubation times and variable reagents and controls. As such, there are no standard cutoffs for positive results and considerable interlaboratory variability may occur at the lower limit of detection of antibody.

Using The Cell-Based Crossmatch In The Modern Era

The cell-based crossmatch (most commonly the FCXM in the modern era) remains in many programs the gold standard for immediate pretransplant decision making. Unlike single antigen bead assays, which may not be easily performed on serum collected on the day of transplantation, the flow crossmatch may be quickly performed with serum that is temporally reflective of the immediate transplant environment. Considering the limitations described previously, we encourage the simultaneous performance of auto crossmatches (to assess for autoantibody), as well as crossmatches on historical sera that have been thoroughly evaluated using solid-phase antibody platforms. The optimal interpretation of a crossmatch should consider the solid-phase antibody data to confirm or exclude HLA antibody as the cause of the positive crossmatch. This is more easily arranged for living donor transplants. For deceased donor transplantation, historical sera crossmatches with their corresponding solid-phase antibody data, which are already known, may provide additional context for interpretation of a positive current serum cell-based crossmatch, when a current solid-phase result is not immediately available.

If a positive cell-based crossmatch is interpreted as caused by an autoantibody or non-HLA antibody, the transplant may proceed in most circumstances, as the crossmatch is deemed immunologically irrelevant. If a positive cell-based crossmatch is interpreted as caused by an HLA antibody or an HLA antibody cannot be reliably excluded, in most circumstances the transplant will not proceed given higher immunologic risk or will require significantly augmented immunotherapy.

The VXM has become more commonplace. It has replaced the pretransplant cell-based crossmatch in some centers, where regulations permit, without demonstrable negative impact on patient and graft outcomes, and where VXM results are unambiguous in the context of a reliable history excluding recent sensitizing events. Nonetheless, in circumstances where the antibody testing is indeterminate, the cell-based crossmatch still may serve as additional information to adjudicate the relevance of the antibody result.

An additional conundrum exists when the cell-based crossmatch is negative but the VXM is positive, due to the increased sensitivity of SAB over cellular assays. AMR has been reported in up to 55% of these patients , , , (greater than VXM negative counterparts) impacting graft survival in some , but not all , series. Indeed, the decision to proceed with a transplant in the face of a positive crossmatch or negative crossmatch in the presence of HLA DSA should usually consider center expertise and the patient-specific implications of not receiving the transplant (including the chance for a future DSA negative offer, and risk of dialysis-associated mortality). , The exception is with the positive cytotoxic crossmatch, where HLA DSAs are confirmed because this confers an unacceptably high risk of hyperacute rejection precluding immediate transplant.

Clinical Relevance

Although the output of the single-bead assays is a numerical mean fluorescence intensity on each bead, which has a unique antigen on it, the mean fluorescence intensity is insufficient to confirm the detection of true antibodies. Moreover, there is no universal fluorescence intensity threshold beyond which a positive antibody should be assigned. For multiple lab-specific validation and reagent-based reasons, it is strongly recommended that the readers consult with their own laboratory as to the analytic strategies employed to optimally identify antibodies and thresholds used for calling a positive test.

The Evolving Role of Histocompatibility Consultation

Over the almost 50-year history of histocompatibility testing, testing has gone from simple pretransplant serologic-based assays with dichotomous risk classifications guiding the most basic of transplant decision making to sensitive, specific, individualized, and dynamic monitoring throughout the duration of the transplant experience ( Table 68.4 ). Indeed, the test platforms and their corresponding results have evolved to such a degree of complexity that significant and discipline-specific postgraduate training and expertise are required to render a thoughtful and informative opinion. Adding to the complexity is the awareness that all biologically based HLA testing has inherent strengths and limitations. Plus, understanding the interpretation of these myriads of tests in the context of these limitations is highly nuanced and requires consideration of not only immunologic but also competing medical and surgical complications (e.g., infection and cancer), as well as the socioeconomic implications for the patient. , Histocompatibility testing has evolved to such a state of complexity and expertise that ongoing patient-specific consultation with laboratory specialists beyond simply the passive receipt of testing results is a mandatory part of good clinical transplant care, both pretransplant and throughout the post-transplant course.

Table 68.4

Clinical Histocompatibility Testing Menu and Associated Interpretations and Actions

Timepoint Clinical Question(S) Applicable Tests Used Interpretation and Potential Actions
Pretransplant How sensitized is the patient?
How difficult is it to find a (HLA-based) suitable donor?
HLA typing
HLA AB screening and identification
If reduced access to donors from high cPRA, then access to more donors is optimal (increased sharing for acceptable mismatches, kidney paired donation programs) or desensitization to reduce current burden of circulating antibody.
What is the patient’s risk of a memory response post transplant? HLA typing
HLA AB screening
In the context of a good clinical history of sensitizing events
All patients with HLA antibodies, as well as those with sensitizing events, should be considered at higher risk of memory responses post transplant; closer follow-up post transplant may be warranted.
At transplant Is the patient PREDICTED to have HLA antibodies to the donor?
Will the cell-based crossmatch before transplant be positive?
The virtual crossmatch: donor typing PLUS
HLA AB identification (current and historical results)
Positive HISTORICAL VXM: Patient is at higher risk of memory response. Some programs do not transplant; others augment immunotherapy or monitoring.
Positive CURRENT VXM: Patient is at higher risk of AMR. Transplant decision making depends on strength of antibody (AB test plus cell-based crossmatch).
Post transplant Has the patient developed de novo HLA antibodies? (no graft dysfunction) Donor typing from transplant
Post-transplant AB testing
If positive, may indicate risk of future or current subclinical) AMR? Guides further diagnostics or monitoring, noting certain HLA loci portend a worse prognosis (class II).
Does the patient have AMR? (with or without graft dysfunction) Donor typing
Post-transplant AB testing
In context of biopsy if available
HLA antibodies are supportive of a diagnosis of AMR but may not always be present.

AB , Antibody; AMR , antibody-mediated rejection; HLA , human leukocyte antigen; VXM , virtual crossmatch.

Kidney Allograft Rejection

Mechanistic Overview

When the kidney allograft is recovered from the donor, cold and warm ischemia of variable length and severity occur. Allograft ischemia, in addition to death and events that take place before and during intensive care unit stay in the case of deceased donors, create a proinflammatory milieu upon reperfusion that increases the expression of donor HLA molecules within the allograft, in renal tubular cells, and the endothelium. When present in the recipient before transplantation, donor-specific anti-HLA antibodies (DSA) interact with the allograft endothelium, resulting in hyperacute rejection, as discussed previously.

After transplantation, donor dendritic cells (DCs) that reside within the allograft enter the recipient’s circulation. Throughout the recipient’s post-transplant course, even after donor DCs are exhausted, recipient DCs circulate through the allograft and can engulf and present donor-derived HLA peptides. Donor and recipient DCs both traffic to secondary lymphoid organs, where they interact with the recipient’s CD8 and CD4 T cells. Donor HLA molecules are hence recognized through the direct, indirect, and semidirect pathways as nonself. Allorecognition leads to recipient T cell activation, clonal proliferation, and migration to the allograft. The cellular infiltrate, composed predominantly of CD8 and CD4 lymphocytes, constitutes T cell–mediated rejection (TCMR). Interactions between recipient T and B lymphocytes in germinal centers of lymph nodes, as well as in tertiary lymphoid organs that can develop within the graft, can lead to B cell differentiation into plasmocytes and the production of de novo DSA. DSA can then further damage the allograft through complement-dependent and complement-independent mechanisms, causing AMR.

Though treatment can reverse the rejection process, ongoing alloimmune injury of variable severity can persist. This leads to the development of chronic histologic lesions in the allograft arteries, glomeruli, peritubular capillaries, and interstitium, which ultimately result in graft demise. Elements of activity and chronicity of either or both TCMR and AMR (mixed rejection) can coexist on the same biopsy. Rejection episodes are classified histologically using the Banff classification system.

Acute Cellular and Antibody–Mediated Rejection

Acute T Cell–Mediated Rejection

The main histologic feature of acute TCMR is a mononuclear leukocyte infiltrate located in the tubules, interstitium, and/or arteries of the graft. The cellular infiltrate is classically composed of T cells and monocytes/macrophages. Acute TCMR is classified as Banff grade IA or IB depending on the extent of inflammation, when the cellular infiltrate affects only the tubules (tubulitis) and interstitium (interstitial infiltrate). When endarteritis is present, acute TCMR is classified as Banff grade IIA, IIB, or III according to the severity of the vascular involvement. In acute TCMR, vascular involvement has classically been regarded as portending a poor prognosis in terms of resistance to treatment and graft survival. This may be due, in part, to the previously unrecognized coexistence of cell-mediated endarteritis with classical features of AMR, such as DSA and microcirculatory inflammation. ,

Acute Antibody-Mediated Rejection

Acute AMR is characterized by acute tissue injury as evidenced by either microvascular inflammation (glomerulitis, peritubular capillaritis), endarteritis, or, in the absence of other causes, thrombotic microangiopathy or acute tubular injury. Evidence of antibody interaction with the endothelium must also be present to make this diagnosis. Although this interaction has long been recognized by diffuse C4d deposition in peritubular capillaries, antibodies can target the endothelium through both complement-dependent and complement-independent cytotoxicity. It is important to remember that glomerular C4d staining can be a normal finding, though the cellular basis for this in native kidneys and normal allografts is not well studied. Importantly, the existence of C4d-negative AMR has been well established in recent years , , and other markers of endothelial interaction with antibodies have been reported. Validated molecular classifiers, including increased endothelial, NK cells, or interferon γ-inducible gene transcripts , are now accepted as evidence of antibody-endothelial interaction, as is the presence of microvascular inflammation. Although circulating DSA is also one of the diagnostic criteria for AMR, the presence of non-HLA antibodies, diffuse C4d staining, or validated AMR gene transcripts/molecular classifiers can substitute for its presence according to the latest version of the Banff classification system. The prognosis of DSA-negative AMR is reportedly similar to that of DSA-positive AMR. ,

The use of microarray technology to analyze RNA transcripts from biopsies obtained from transplant rejection cases has provided novel insights on the mechanism of acute rejection in recent years. For instance, transcripts from NK cells and macrophages, as well as endothelial-associated transcripts, have been associated with DSA and AMR. ,

Chronic Active Cellular Rejection, Chronic Active and Inactive Antibody-Mediated Rejection

When cell-mediated alloimmune injury persists in time, chronic mononuclear cell infiltration leads to allograft fibrosis through mechanisms discussed in section 3.3. Hence the presence of interstitial inflammation in both sclerotic and nonsclerotic cortical areas in combination with tubulitis is the hallmark of chronic active tubulointerstitial (grade IA and 1B) TCMR. Chronic mononuclear cell infiltration can also involve the allograft arteries and lead to chronic vascular remodeling, with arterial intimal fibrosis and neointima formation (grade II chronic active TCMR).

Chronic active or inactive AMR can develop when antibody-mediated injury to the allograft endothelium persists over time. Persistent antibody-mediated endothelial injury to the allograft arteries can lead to arterial intimal fibrosis, while injury to the microvasculature is evidenced by double contours in glomerular capillaries or multilayered basement membranes in peritubular capillaries. Whether chronic AMR is considered active or inactive depends on the concomitant presence or absence of evidence of active/recent endothelial-antibody interaction on the biopsy (e.g., diffuse C4d staining in peritubular capillaries, microvascular inflammation, or gene transcripts of endothelial injury).

Chronic Allograft Injury

The term chronic allograft injury (CAI) has been used to describe the clinical presentation of relatively slow renal function decline, proteinuria, and/or hypertension occurring more than 3 months after renal transplantation, accompanied by interstitial fibrosis and tubular atrophy (IFTA) on the graft biopsy. Rather than being a disease per se, CAI and IFTA are the final common pathways of both alloimmune and nonalloimmune injuries that can occur in transplanted kidneys. Moderate to severe IFTA is a predictor of adverse graft outcomes, being associated with both impaired function and poorer graft survival. , Recent data show that specific causes for IFTA can be found in >80% of cases through biopsy and/or clinical history. , Causes include recurrent glomerular disease, nonadherence with transplantation medications, polyomavirus nephropathy, calcineurin-inhibitor nephrotoxicity, recurrent pyelonephritis/reflux, and rejection. ,

One of the key factors that triggers the development of IFTA is inflammation. Processes such as rejection, recurrent glomerular diseases, BK polyomavirus, and pyelonephritis all involve the activation of macrophages and graft infiltration by leukocytes (mainly T cells). Under the influence of proinflammatory cytokines, T cells, macrophages, and tubular epithelial cells produce TGF-β, connective tissue growth factor (CTGF), and other profibrotic cytokines. In response to these cytokines, fibroblasts, fibrocytes, and pericytes become activated and transform into matrix-producing contractile myofibroblasts, leading to allograft fibrosis.

Another important trigger of fibrosis is microvascular injury and rarefaction, which can occur during ischemia-reperfusion or acute/chronic AMR. In kidney transplant patients, ischemia-reperfusion injury occurs at the time of transplantation. Acute kidney injury (AKI) occurring in the immediate post-transplant period is termed delayed graft function. Delayed graft function is associated with a moderately increased risk of graft loss and with the degree of IFTA after transplantation. In experimental models of ischemia-reperfusion injury, renal perfusion in peritubular capillaries is compromised within minutes of unclamping. , Endothelial dysfunction/injury and apoptosis compromise microcirculatory renal blood flow through decreased vasodilatory capacity, coagulation activation, and the formation of microvascular thrombi, as well as increased rolling/adhesion/transendothelial migration of inflammatory cells. , Because the regenerative capacity of endothelial cells in the peritubular capillaries may be limited, microvascular damage occurring during an episode of AKI can lead to permanent peritubular capillary rarefaction. Similarly, during acute and/or chronic active AMR, persistent peritubular capillaritis can lead to microvascular injury and remodeling, evidenced by the multilayering of the peritubular capillary vascular basement membrane and peritubular capillary dropout. The extent and severity of peritubular capillaritis is strongly associated with graft loss.

Regardless of its initial cause, loss of peritubular capillaries favors chronic hypoxia, leading to overexpression of hypoxia-inducible factor 1-α (HIF-1α). HIF-1α promotes the transcription of fibrogenic genes, such as TGF-β and CTGF, accumulation of α-smooth muscle actin–positive myofibroblasts, as well as the production of fibrogenic mediators by dying endothelial cells. Recent studies using in vivo imaging and electron microscopy demonstrated a tight correlation between peritubular capillary dysfunction/rarefaction and renal fibrosis in both murine models of AKI and human kidney biopsy samples.

Calcineurin-inhibitor toxicity is associated with the development of IFTA , , through various mechanisms, including direct upregulation of TGF-β in tubular epithelial cells, and nodular arteriolar hyalinosis, which causes narrowing of the arteriolar lumen and leads to distal ischemia, promoting the formation of free radicals and reactive oxygen species that cause cell injury and death by apoptosis.

Mechanisms of immunosuppressive drugs

To prevent the development of rejection, immunosuppressive drug regimens comprise induction and maintenance immunosuppressive agents. Induction agents are powerful immunosuppressants that are administered in the immediate perioperative period and discontinued in the early post-transplant period. These agents include polyclonal antibodies (ATGs) and monoclonal antibodies (basiliximab, alemtuzumab). Maintenance immunosuppressive agents are also administered at the time of transplantation but are continued for the lifespan of the graft and sometimes beyond. They include calcineurin inhibitors (tacrolimus and cyclosporine), mycophenolate mofetil, rapamycin, azathioprine, and corticosteroids. The majority of American centers use ATG or basiliximab for induction. A combination of tacrolimus, mycophenolate mofetil, and corticosteroids is most often used for maintenance immunosuppression, while some centers use tacrolimus and mycophenolate mofetil without steroids. Next, we discuss the mechanism of action of immunosuppressive agents. Fig. 68.9 illustrates the action mechanisms of most frequently used immunosuppressive drugs.

Fig. 68.9

Mechanisms of action of immunosuppressive agents viewed as a function of inhibiting T cell activation.

Signal 1: The calcium-dependent signal induced by T-cell receptor (TCR) stimulation results in calcineurin activation, a process inhibited by cyclosporine (CsA) and tacrolimus. Calcineurin dephosphorylates nuclear factor of activated T cells (NFAT), enabling it to enter the nucleus and bind to the interleukin-2 (IL-2) promoter. Corticosteroids bind to cytoplasmic receptors, enter the nucleus, and inhibit cytokine gene transcription in both T cells and the antigen-presenting cells (APCs). Corticosteroids also inhibit nuclear factor κ–light-chain enhancer of activated B cells (NF-κB) activation (not shown). Signal 2: Costimulatory signals are necessary to optimize T cell IL-2 gene transcription, prevent T cell energy, and inhibit T cell apoptosis (belatacept target). Signal 3: IL-2 receptor stimulation induces the cell to enter the cell cycle and proliferate. Signal 3 may be blocked by IL-2 receptor antibodies (basiliximab) or by mammalian target of rapamycin (mTOR) inhibitors (such as rapamycin), which inhibits S6 kinase activation. Following progression into the cell cycle, azathioprine (AZA) and mycophenolate mofetil (MMF) interrupt DNA replication by inhibiting purine synthesis. Antithymocyte globulin (ATG) has multiple targets including IL-2R, CD3, and CD28, leading to T cell depletion. Alemtuzumab selectively targets CD52 receptor on T cells. MHC, Major histocompatibility complex; PI3K , phosphatidylinositol-3-kinase.

May 3, 2026 | Posted by in NEPHROLOGY | Comments Off on The Immunobiology of Transplantation

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